Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03723 ATGGTAAAGGGAGGGAAGGTTAATAGCAAAGGTGGTTTTAGGAAAAGGGTTAGGTCAAAGGGGGGTGGTTCGGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCGGGGAATGTGTCTGATTGTGGTGAGGATGATTGTTTTTCTTTAGATGGATGTGCGGCGGAGGATAGTTTTGATGGCTTTATAGAAGATGAGGATGTGGGCGAGGTGGAGATTCGAGGGGTGGTGAAATTTAATGGATCGAGGGGTAAAACCAGTGTGAGGCGTCCGGGGAAGAATGTGAGTAAAACTGCGCGGAAGAGACAGAGGATTGAATATGCAGAAGAACTAGATGAGGAGGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGATGATGAAGATTATGATGAAGAAGAAGAGGAGGAAGACGAAGAAGAAAAAGAAGTGGAAGAAGTAGAGGTAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGATGGAAATGACGAGGATGAGGATTTCAATTATGATGATGACGAATTTATACCTGATGAAGAAGATTACACAGATGAGGAGGAAGAAGAAAGAAGGGGCGGGAAGAAGAAAAAAGAGGATTTTAATTATGAAGATGAAGACTTTATACTAATGGAAGAAGAAAGAAGGGGCAGGAAGAAGAAAAAGGAGGATTTCAATGATGAAGATGATGAATTTGTACCAACGGAAGAAGAAAGAAGGGGCAGGAGGAAGAAAAAGGAGGATTTCAATTATGAAGATGAGGAATTTATACCAACGGAAGAAGATTACACGGATGAGGAAGAAGAAGAAATGAGGGGAATAACGAAGAAAAATAATGGCATTAAAATGGGCAAGAAGAACACTTTGAAGAAAAGGGTTTCTGCAGCTTCTAGCAGATGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCTAAGAGAAAGAGAAGAGGAAAGAGTGAAGGATCAAGGAGGAAAGTAAAGTGTGAAGATGCAGACGATTTTTGGGATAATGGACCCGCCATCAGAACAAATAGCAGAAAGAAATCGGGCCAGAAAAGGAGAAGGGTTCTCGTTGAAGATGCCAATTCCTGTTCAGATTGTGAGACTAGACCATCTGATTATGAGTTTACTATTTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCAGGGAGTTGTGCGGAAATATAAGAAGAAACTTGAGGAGAGCTTCTCTTCGAATGAAAAATGAAGAGGTTGAAATACATGAAGATCTACATCAGCAACGGAAGCCTCCAGCACAGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTCGAGGAGTTAAAAATCGAGGTGACAAAGCAGGTTGAATCTCGCTGCCCTCTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCCGCACGATCAACAACAGCACAAGAAGCAGTGATACAAGTGCCGGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTGAGGAGTTACATTGATCCATACGAGTCCGTTATTTGTTCAGAGTGCAATCTAGGTGGAGATGATGCCCTCATGCTACTCTGTGATATATGTGATTCTCCTGCGCATACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAACGCGGTGCTGATTTAAGAGCTACTACCCAAAGCCAGCCTTCCAGACCATCGCCTGTTCATATACGAGAAAGTATAGACCTGAACTTGATGTCATCACCCTATCCATCGTTTGGTCAAGGGTTTGGGCATCTTTCATCCTCTAGATTTTCGGGCAGAAGTGCCGAAGGTGCTTCTCCGATGTCTGGTGGCGGGGCACCAACTGTATCAGAGAGACGACGGATACACCGTCAAATTCAGCAGCTACGATCAATGGATAGAATGACTTATACAACCGGCAGAGTTAACAATGTTTCAGCTACCAATACAATAAGTAACTTGCATAGCTCTCAAATCGATCAAACTAGGGAGCCAACTTCTCAATATACAATGGCACAGGATGTAGGAACATCCTATCACACATTTTTTGAGGAAAGATTAGGCAACAACATCTCTCCACTAATGCAGAATGGAGATCACTTCTCCACAAGAATAAGCAATTCAATAAGGTCAGTGGTTCAGGATTCAACCATGTTTTCCAACGGGGCTATGAACACAGTTATATGGCCTGGATTTTCGGGGACACGCACGTTATCAGATATTGAACCAATCCACCCGTTCAGCAGCAGATCAAACATTGTCACCGAGCGTAGTAATATTCCTCCAACTATCATAGAAGAAGATAACTTGCACATTGTAAAGGAGCAATTGCAGTCAATGGTTAAAAGCCATCTGAAGAGATTGTCAAAAGATACTGATTTGGATTATAGTACATTCAAAGACATTGCGAGGAGTTCTACACATACAATACTTGCTGCTTGTGGACTCGAGCACAAGACGAGCGAGGTTTGTACGGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAACGAGTATGATTAAGGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGGATTTTGGACACAAGAATGTCTTCGCAGTGGTTAAGGTTAGGAATTTAG 2733 0.4219 MVKGGKVNSKGGFRKRVRSKGGGSDDSDEDYVVSDDAGNVSDCGEDDCFSLDGCAAEDSFDGFIEDEDVGEVEIRGVVKFNGSRGKTSVRRPGKNVSKTARKRQRIEYAEELDEEEEEEEEVEEEDDEDYDEEEEEEDEEEKEVEEVEVEEEEEEEKEEEEEEKEVEEVDGNDEDEDFNYDDDEFIPDEEDYTDEEEEERRGGKKKKEDFNYEDEDFILMEEERRGRKKKKEDFNDEDDEFVPTEEERRGRRKKKEDFNYEDEEFIPTEEDYTDEEEEEMRGITKKNNGIKMGKKNTLKKRVSAASSRCRKRSGSRVSKKPKRKRRGKSEGSRRKVKCEDADDFWDNGPAIRTNSRKKSGQKRRRVLVEDANSCSDCETRPSDYEFTISEEEKEQVREARELCGNIRRNLRRASLRMKNEEVEIHEDLHQQRKPPAQKGKEKIEESQGRKGKEKVEELKIEVTKQVESRCPLCKQRFKTISKPARSTTAQEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECNLGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQERGADLRATTQSQPSRPSPVHIRESIDLNLMSSPYPSFGQGFGHLSSSRFSGRSAEGASPMSGGGAPTVSERRRIHRQIQQLRSMDRMTYTTGRVNNVSATNTISNLHSSQIDQTREPTSQYTMAQDVGTSYHTFFEERLGNNISPLMQNGDHFSTRISNSIRSVVQDSTMFSNGAMNTVIWPGFSGTRTLSDIEPIHPFSSRSNIVTERSNIPPTIIEEDNLHIVKEQLQSMVKSHLKRLSKDTDLDYSTFKDIARSSTHTILAACGLEHKTSEVCTVPPPSVCPHIELIAGGQTSMIKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGI 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03723 910 MobiDBLite consensus disorder prediction 304 331 - -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 197 237 - -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 83 364 - -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 110 196 - -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 332 346 - -
Vifa5g03723 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 571 IPR013083 -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 262 277 - -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 426 450 - -
Vifa5g03723 910 SUPERFAMILY FYVE/PHD zinc finger 493 567 IPR011011 -
Vifa5g03723 910 PANTHER F18C1.6 PROTEIN 204 465 - -
Vifa5g03723 910 SMART PHD_3 521 566 IPR001965 -
Vifa5g03723 910 Coils Coil 389 409 - -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 627 649 - -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 1 45 - -
Vifa5g03723 910 Coils Coil 98 172 - -
Vifa5g03723 910 Pfam PHD-finger 521 567 IPR019787 -
Vifa5g03723 910 ProSiteProfiles Zinc finger PHD-type profile. 519 568 IPR019787 -
Vifa5g03723 910 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03723 Vifa-Chr5 1197024989 1197028012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03723 516 565 C2H2 Transcription Factor Family AT3G01460 46.154 6.26e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa5g03723 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03723 - - psat:127132436 1179.85