Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03718 ATGGGAATCATGGATCAAATGAGCAAGGAATGTTGTTCATATGATGAAATGGGTGTGATCAAGAAATGTTGTGCTGATTGCAAAACCACCAAGACCCCACTTTGGAGAGGAGGACCAAATGGACCCAAAACGTTGTGCAACGCTTGTGGAATTAGGTACAGGAAGAGAAGAGGTTGTTGTAAGAAAGGACAAGAAAAGGAAAGGAAGAGAGAGAAATCAGAAAGTGACAGTGATGCTGAGGATGATGATTGGAGTGAGTTTTTGAGAATGAAGTTAGTGGCTTTGGGTGAAGAGGTTTTTTTGCATTCGGTTTTGAAGAAAGAAAAGAGGATTAAGTTAGGTGAAGAGGAAGAAGCTGCTGTGTGTTTAATGGCACTTTCTTGTGGGTTTGTTTTTGCTTGA 402 0.408 MGIMDQMSKECCSYDEMGVIKKCCADCKTTKTPLWRGGPNGPKTLCNACGIRYRKRRGCCKKGQEKERKREKSESDSDAEDDDWSEFLRMKLVALGEEVFLHSVLKKEKRIKLGEEEEAAVCLMALSCGFVFA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03718 133 Gene3D - 20 80 IPR013088 GO:0006355|GO:0008270
Vifa5g03718 133 PANTHER OS01G0976800 PROTEIN 20 132 - -
Vifa5g03718 133 ProSitePatterns GATA-type zinc finger domain. 24 49 IPR000679 GO:0006355|GO:0043565
Vifa5g03718 133 SMART GATA_3 18 69 IPR000679 GO:0006355|GO:0043565
Vifa5g03718 133 CDD ZnF_GATA 24 72 IPR000679 GO:0006355|GO:0043565
Vifa5g03718 133 Pfam GATA zinc finger 24 57 IPR000679 GO:0006355|GO:0043565
Vifa5g03718 133 ProSiteProfiles GATA-type zinc finger domain profile. 24 54 IPR000679 GO:0006355|GO:0043565
Vifa5g03718 133 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 60 - -
Vifa5g03718 133 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03718 Vifa-Chr5 1195859099 1195859718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03718 21 133 C2C2-Gata Transcription Factor Family AT5G49300 53.982 3.32e-30 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa5g03718 GATA 7.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03718 - - cam:101512290 178.718