Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03717 ATGTCGTACCGTCCCACCGCAAACGCGAGGACCGAGGTCCGTCGCAACCGATACAAGGTCGCCGTTGATGCCGAAGAAGGTCGCAGACGGCGGGAGGATAACTTGGTTGAGATCCGGAAGAATCGCAGGGAGGAAAGCTTGCAGAAGAAGAGGCGTGAGGGACTTCAGAATCAGCAGATGCCTGCGTCAGTTCAATCTGGTTTACTAGAGAAAAAGTTGGAACACCTACCAGCCTTGGTTACAGGAATTTGGACTGATGATAATAACATGCAGTTCGAGGCAACAACTCAGTTTCGGAAGTTACTTTCAATTGAACGTAGCCCACCGATTGAGGAGGTTATACAAGCTGGTGTGGTTCCGCGCTTTGTTGAGTTTTTGATGAGGGAGGATTTTCCACAGCTGCAGTTTGAGGCTGCTTGGGCTTTGACAAATATAGCTTCTGGAACTTCTGATAACACTAAGGTAGTAATTGATAGCGGTGCTATCCCAATTTTTGTGAAGCTTCTTGCTTCTCCTAGTGATGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGAGATTCACCTAAGTGCCGTGATCTTGTTCTCGGTCATGGAGCTCTGCTTCCTCTGTTGGCTCAATTGAATGAGCATGCCAAACTTTCTATGCTCAGAAATGCTACTTGGACACTCTCAAACTTTTGCAGGGGGAAGCCACAGCCTGCTTTTGACCAGGTTAAGCCTGCGCTTCCCGCACTTGCCGGTCTCATTCATTCTAATGATGAGGAAGTCTTAACTGATGCCTGTTGGGCACTTTCATATCTTTCTGACGGTACAAATGATAAAATTCAAGGCGTAATTGAAGCTGGTGTCTGTAGCCGGCTTGTTGAGCTTCTTCAGCACCCATCTCCTTCTGTGCTTATTCCTGCTCTCCGTACAGTTGGAAATATTGTCACTGGAGATGACATGCAGACACAGGTCATCATCAACCATCAAGTTCTTCCCCGTCTTATGAATCTCTTGGCTAATAATTATAAAAAAAGCATCAAGAAAGAAGCATGTTGGACGTTGTCGAATATCACAGCTGGGAATACACAACAGATTCAGGCCGTAATTGATGCCAATATAATTCCTCCTTTGGTCGCCTTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCATGGGCCATCTCTAATGCTACATCGGGTGGATCTCATGAACAACTCAAGATCTTGGTAAATCAAGGGTGTATTAAGCCTCTGTGTGATCTTCTCATATGCCCTGATCCTAGGATTGTTACTGTTTGTCTTGAAGGGCTTGAAAATATCTTAAAGGTAGGCGAGGCTGATAAAAATATTGGCAGCACTGATGGTGTGAATCTGTTTGCCCAAATGATTGATGATGCTGAGGGTTTGGAGAAAATAGAGAACCTCCAGAGTCATGACAACACCGAGATTTATGAAAAGGCTGTGAAGATTCTCGAGACATACTGGTTGGAGGAAGATGATGAGACCATGCCTGCAGGGGAAGGGTTCAACTTTGGTGGCTCCGAAGTTCCTTCCGTGCCTACTGGTGGATTCAACTTCAATTAG 1587 0.4575 MSYRPTANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGLQNQQMPASVQSGLLEKKLEHLPALVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSDNTKVVIDSGAIPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIEAGVCSRLVELLQHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQVLPRLMNLLANNYKKSIKKEACWTLSNITAGNTQQIQAVIDANIIPPLVALLQNAEFDIKKEAAWAISNATSGGSHEQLKILVNQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGSTDGVNLFAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDETMPAGEGFNFGGSEVPSVPTGGFNFN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03717 528 PANTHER IMPORTIN ALPHA 14 501 - -
Vifa5g03717 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Vifa5g03717 528 Gene3D - 74 497 IPR011989 -
Vifa5g03717 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Vifa5g03717 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Vifa5g03717 528 MobiDBLite consensus disorder prediction 42 61 - -
Vifa5g03717 528 FunFam Importin subunit alpha 13 52 - -
Vifa5g03717 528 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Vifa5g03717 528 SUPERFAMILY ARM repeat 15 501 IPR016024 -
Vifa5g03717 528 Gene3D - 13 52 IPR036975 GO:0006606
Vifa5g03717 528 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Vifa5g03717 528 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Vifa5g03717 528 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Vifa5g03717 528 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Vifa5g03717 528 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Vifa5g03717 528 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Vifa5g03717 528 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Vifa5g03717 528 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Vifa5g03717 528 PIRSF Importin_alpha 5 527 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vifa5g03717 528 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Vifa5g03717 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Vifa5g03717 528 SMART arm_5 360 400 IPR000225 GO:0005515
Vifa5g03717 528 SMART arm_5 106 147 IPR000225 GO:0005515
Vifa5g03717 528 SMART arm_5 149 189 IPR000225 GO:0005515
Vifa5g03717 528 SMART arm_5 234 273 IPR000225 GO:0005515
Vifa5g03717 528 SMART arm_5 275 315 IPR000225 GO:0005515
Vifa5g03717 528 SMART arm_5 403 443 IPR000225 GO:0005515
Vifa5g03717 528 SMART arm_5 191 232 IPR000225 GO:0005515
Vifa5g03717 528 SMART arm_5 317 358 IPR000225 GO:0005515
Vifa5g03717 528 FunFam Importin subunit alpha 74 497 - -
Vifa5g03717 528 Pfam Atypical Arm repeat 458 503 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03717 Vifa-Chr5 1195853311 1195857160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03717 132 392 U-box Gene Family AT3G46510 24.138 5.68e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03717 K15042 - gmx:100789135 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03717 5 1195853311 1195857160 Vifa3g01975 3 496391785 496396464 ECH
Vifa3g01975 3 496391785 496396464 Vifa5g03717 5 1195853311 1195857160 ECH
Vifa5g03717 5 1195853311 1195857160 Vifa5g03717 5 1195853311 1195857160 ECH
Vifa5g03717 5 1195853311 1195857160 Vifa3g01975 3 496391785 496396464 PCT