Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03716 ATGGATCGAGATGGAGCAGGATCCAACGGTGGATCTTGCTACTACTCTGTTCTTGGCATTCGCAGTGACGCATCCTCCTCTGATATTCGCACCGCTTACCGGAAACTCGCTATGAGATGGCACCCTGATAAATGGACTCGGAATCCTGCTACTGCCGGTGAAGCAAAATTACGGTTTCAGCAAATTCAAGAAGCATACTCAGTTCTCTCTGATGAGTCTAAAAAATCAATGTACGATGCTGGACTCTATGATCCTTTGGAAGAAGAAGATCAAGAATTTTGTGATTTTATGAGCGAAATGGTTTCAATGATGAACAATGTTAAAGATGAGGGTGATAGTTTTGAGGATTTACAGAGGATGTGGGTGGAGATGGTGGGAGGAGATGGAATGGGGTGTGATTTGAAGCAGGATCAGATGGCTGGGAAGAGAGGGCGATCAAGTGGATCAAAAGGCAATGCAGCCAAGCGCAGCAATCATCGCCGCTAG 486 0.4588 MDRDGAGSNGGSCYYSVLGIRSDASSSDIRTAYRKLAMRWHPDKWTRNPATAGEAKLRFQQIQEAYSVLSDESKKSMYDAGLYDPLEEEDQEFCDFMSEMVSMMNNVKDEGDSFEDLQRMWVEMVGGDGMGCDLKQDQMAGKRGRSSGSKGNAAKRSNHRR 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03716 161 Gene3D DnaJ domain 2 104 IPR036869 -
Vifa5g03716 161 SMART dnaj_3 12 74 IPR001623 -
Vifa5g03716 161 PRINTS DnaJ domain signature 33 48 IPR001623 -
Vifa5g03716 161 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vifa5g03716 161 PRINTS DnaJ domain signature 54 74 IPR001623 -
Vifa5g03716 161 PANTHER PUTATIVE, EXPRESSED-RELATED 8 139 - -
Vifa5g03716 161 Pfam DnaJ domain 14 79 IPR001623 -
Vifa5g03716 161 CDD DnaJ 13 71 IPR001623 -
Vifa5g03716 161 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Vifa5g03716 161 ProSiteProfiles dnaJ domain profile. 13 82 IPR001623 -
Vifa5g03716 161 SUPERFAMILY Chaperone J-domain 13 88 IPR036869 -
Vifa5g03716 161 MobiDBLite consensus disorder prediction 132 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03716 Vifa-Chr5 1195128312 1195129386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03716 13 80 C2H2 Transcription Factor Family AT1G74250 42.029 1.61e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03716 - - mtr:11423150 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03716 5 1195128312 1195129386 Vifa5g03716 5 1195128312 1195129386 ECH