Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa5g03710 | ATGTCTAACACCAGCAACAATGTCGCTGGGGTTGATAACACATTCAGAAGAAAATTTGATCGTGAAGAGTATCTCGAACGAGCTCGGGAGCGTGAGAGACAGGAGGAAGAGGGTCGAGCAAAACCTAAAGGTAAAGGTCCTCCAGTGCAGAGGAAGCCCTTGAAACATAGGGATTTTGAAGTAAACCTTGAATCCCGCTTAGGAAAGACTCAGGTTGTAACGCCGGTTGCACCACTAAGCCAACAGGCTGGATATTTCTGCTCAGTTTGTGAGTGTGTGGTGAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCATTGGGCATGTCAATGCGAGCTGAACGTTCTTCTCTCAAACAGGTTCAGGAACGGTTTGAATCTCTTAAGAAACGTAAAGACATTGGAAGCTTTACAGAGCAAGATTTTGATGAAAGGATTTTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGACTGCGTCGGGAAAAGAAAAAAGAAAAGAAGATGGAGGCAATAGAAGAACCGGAAATCGATCCTGATGTTGCTGCCTTGATGGGGTTTGGAGGTTTTCGGTCATCCAACAAAAAGTGA | 609 | 0.4368 | MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKGKGPPVQRKPLKHRDFEVNLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRAERSSLKQVQERFESLKKRKDIGSFTEQDFDERILKQQQEEEERKRLRREKKKEKKMEAIEEPEIDPDVAALMGFGGFRSSNKK | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03710 | 202 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 4 | 202 | IPR040107 | GO:0000398|GO:0005681 | |
| Vifa5g03710 | 202 | SUPERFAMILY | beta-beta-alpha zinc fingers | 81 | 124 | IPR036236 | - | |
| Vifa5g03710 | 202 | Coils | Coil | 117 | 137 | - | - | |
| Vifa5g03710 | 202 | MobiDBLite | consensus disorder prediction | 20 | 44 | - | - | |
| Vifa5g03710 | 202 | MobiDBLite | consensus disorder prediction | 20 | 54 | - | - | |
| Vifa5g03710 | 202 | Pfam | Zinc-finger of C2H2 type | 85 | 109 | - | - | |
| Vifa5g03710 | 202 | Gene3D | Classic Zinc Finger | 79 | 118 | - | - | |
| Vifa5g03710 | 202 | SMART | ZnF_U1_5 | 82 | 116 | IPR003604 | GO:0003676|GO:0008270 | |
| Vifa5g03710 | 202 | FunFam | zinc finger matrin-type protein 2-like | 79 | 117 | - | - | |
| Vifa5g03710 | 202 | Coils | Coil | 153 | 175 | - | - | |
| Vifa5g03710 | 202 | MobiDBLite | consensus disorder prediction | 149 | 180 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03710 | 4 | 147 | C2H2 Transcription Factor Family | AT3G05760 | 79.167 | 9.45e-82 | 238 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa5g03710 | K12848 | - | gmx:100795833 | 311.227 |