Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03708 ATGGAGAAAAAACGTTCCAAGGGAAGTTTCCTTAGTTTGTTTGATTGGAATGCCAAATCTCGGAAGAAGCTTGTTTGGAATAATCCAAACTTACCTGAGGTTTCAAAGCAAGGAAAGGAAAATCTAGAGAATTTGCCAGACTCGCAGTTCTATAGGATAAAAGGGGATGAGAATGGAGGAAGTCCGAGTGATATTGCAAGTAGTGATTTTAACTGCGCTGTATCAGGTTGTAGTGATGAAGGGTGTGGTAGTAAAGCCCCTGGGTTAGTAGCAAGACTCATGGGTTTGGATTCGTTGCCGACTTCAGAAGTCAGTGAGCTCTCCGGTGCTTCATTTTACAGCTCCAACTCTCATGGAGGTTCTCGTTATAATGCGGGTGATCTTCGTTTCACGGATGACTTCCGTCACGCCGACTACTTAAACACACCATTTAAACCGGAAAAGTCTTCTTGGGACACAGTGGAATCAAAGGCACGTAAAGTGGAAAACCGGCCAATGAAGAGATTTCAAACTGAAATGTTGCCTCCAAAGTCAGCTAAACCCATTCCAGTTACTCATAATAGATTATTGTCTCCCATCAAGAGTAATGGTTTTCTGCCGCAGAAAAATGCAGCTCACATAATGGAGGCGGCTGCTAAAATAATTGATGGAAGCCCTCAGCCGTATACGAGGAATAGAATGCTATCGTCCGGGTCTTCATCTGTTCCCATAAGAATTCTTGATTTGAAAGAGAGATTGGAAGCTGCACAATATGCACCCATGCCTGGAAAGCAAGCGGATCCGAACAATACCAACCCTTCAAACTGCAAACCTAGTGAGAGGAGCTCTAATTTGTACAAGTCTACATTGGCATTCAAGGGTTTAAGAGATTCTGAAAAACGTAGTTCGTGTCATTTAGCAAGTAAAGGAAAATCGGGTTCTCTTGTAATGTCATCCAAAAACAATGTTCAAAGCCGAGATACATTGGTTTCAAATGGAGATAGGAAATATACGAGGCAGAAAGAACAGAATGATATAAATTCAAACCATCCCCCAAGGAACCAGAAACCAATTGTAAACCGAGCATTGCCGCAGAAAACAAATGCAAACCGTAATAGCAATGTGCTGGTACAGAATAATCAAAAGCAAAACAGCGTGATTTCCAAAGGTAAATCAGCCTCAAAAATAGATTCAAACAAGCCAGCAACACGAGGTTCTTCTTCTGAAAGTTCTACTGGAATCAGGAAGGCAACAAACAAGGGTGCTTCAAATGTCAATATTCTGCCTAAAAGGTCAACCTCTAGGGCAACTGATAACCGAAAGGAGTTTCCCCCATCCAAAACACAAAGTATTTCCCAAAAGAAAAAGTATAACAGCAGAGGCGTTCACGAGGCAAGAAGTCCTGATCATGCAAAAAATGATTTCGAAAGCAAGTCCATAAAATGCAATTTTACAATTGATGGAAGTATTGATCATAATGCATTTAACATGAACGAAAGCAGTGATGTTATTTCATTTACATTTACTTCTCCCTTGAGGAAAAACACGGCGGAGTCATTATCCTCTTCTGACCAACTGACGGAAACCAGATCTAGATTTGGTATCGACTCTCTTGGGCACAGTGATAATCTTCATCCCAAAAAATTATCACTATCTCCGCCACATATGATAGATAGTGATGCATTGAGTGTCCTGTTAGAGCAAAAGCTGCAAGAACTAACATCGAGACTTAACTTACCTCAATGTACCCTAGCCTCGGAGGAGCCTTCTACTGGGTTGAGATCTAGTTTGCAAGATAAAGCATCCAGTATGGTAAACACCACAGCTAAGGAACGAGATGAAACGTTCAGTGATGAATTTAATAGAATGCATAACTATCGATATTATTCAAGTGATGAGCCAGTGCTTAACATGAATCAGCAACTGCAGACATCAGAAGTAAGGGAAGATCCTAGCTATAGCAGCAACAATGAAAGTGTAAATGATCTAGGTTGTCAACATTCCAATGCTGATACAAACTTTCAAGTTCCTTCTGTCAGTGAAAGTTACATGGATAGTGAAGACAGTACATATGGCAGCACGGTTTATTCTTCCATGCAAGATGAAGAAGTATCTAATATTTCCCAGATAAACAACGGATCTGAATCATTTGAAAATGAAGTGACTTCGTCAGAGCAAAGCTCTTCCGTATCCACCGTGCGCAACGGGTCTGTCACACAAATAATCAGAGCACCAAACATGGTAGACTTTAAAAGATCAGGCATTATCGAACTTGATTATGTACAGAACATACTCGGCAATGCAGAGTTTATGGCAGAAGAATTCGTCATGGGTCGAACTAACACAGTGATAATGCCAAATCTCTTCGATCTGTTGGAGAATCATAGTACCGGAACAACAACATACTGCAGAGAAGAAGAGTACTCTAAGCTTGAAAGGAAGGTTTTATTCGACTATGTGAGTGAGTCCTTAGAGTCGAGATGCGAACAAGCTTTTGTTGGAACGTGCAAATCATGGCCTAGATGGGTGACATCGATTCAGATGAAGAACATGTTAGCAGTAGAATTGTACAAAGAGATGTTGAGTTTTAGGAACATTGAAGATGTTGTGGCGGATGAACTATTGAGCAATGACATGAGTATTGGATATGGGAAATGGCTTGACTTTGATATTGAAGCATTTGAAGAGGGGTTAGAGGTTGAAGAAGACTTGCTAGAATCTTTGATTGATGAATTGGTTTCTGATTTGTTGGTTGGTTAA 2739 0.406 MEKKRSKGSFLSLFDWNAKSRKKLVWNNPNLPEVSKQGKENLENLPDSQFYRIKGDENGGSPSDIASSDFNCAVSGCSDEGCGSKAPGLVARLMGLDSLPTSEVSELSGASFYSSNSHGGSRYNAGDLRFTDDFRHADYLNTPFKPEKSSWDTVESKARKVENRPMKRFQTEMLPPKSAKPIPVTHNRLLSPIKSNGFLPQKNAAHIMEAAAKIIDGSPQPYTRNRMLSSGSSSVPIRILDLKERLEAAQYAPMPGKQADPNNTNPSNCKPSERSSNLYKSTLAFKGLRDSEKRSSCHLASKGKSGSLVMSSKNNVQSRDTLVSNGDRKYTRQKEQNDINSNHPPRNQKPIVNRALPQKTNANRNSNVLVQNNQKQNSVISKGKSASKIDSNKPATRGSSSESSTGIRKATNKGASNVNILPKRSTSRATDNRKEFPPSKTQSISQKKKYNSRGVHEARSPDHAKNDFESKSIKCNFTIDGSIDHNAFNMNESSDVISFTFTSPLRKNTAESLSSSDQLTETRSRFGIDSLGHSDNLHPKKLSLSPPHMIDSDALSVLLEQKLQELTSRLNLPQCTLASEEPSTGLRSSLQDKASSMVNTTAKERDETFSDEFNRMHNYRYYSSDEPVLNMNQQLQTSEVREDPSYSSNNESVNDLGCQHSNADTNFQVPSVSESYMDSEDSTYGSTVYSSMQDEEVSNISQINNGSESFENEVTSSEQSSSVSTVRNGSVTQIIRAPNMVDFKRSGIIELDYVQNILGNAEFMAEEFVMGRTNTVIMPNLFDLLENHSTGTTTYCREEEYSKLERKVLFDYVSESLESRCEQAFVGTCKSWPRWVTSIQMKNMLAVELYKEMLSFRNIEDVVADELLSNDMSIGYGKWLDFDIEAFEEGLEVEEDLLESLIDELVSDLLVG 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03708 912 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 908 - -
Vifa5g03708 912 MobiDBLite consensus disorder prediction 337 426 - -
Vifa5g03708 912 MobiDBLite consensus disorder prediction 579 603 - -
Vifa5g03708 912 MobiDBLite consensus disorder prediction 252 278 - -
Vifa5g03708 912 MobiDBLite consensus disorder prediction 450 467 - -
Vifa5g03708 912 MobiDBLite consensus disorder prediction 637 665 - -
Vifa5g03708 912 MobiDBLite consensus disorder prediction 300 324 - -
Vifa5g03708 912 MobiDBLite consensus disorder prediction 257 278 - -
Vifa5g03708 912 Pfam DUF761-associated sequence motif 78 105 IPR032795 -
Vifa5g03708 912 Coils Coil 884 904 - -
Vifa5g03708 912 Pfam Domain of unknown function (DUF4378) 750 904 IPR025486 -
Vifa5g03708 912 MobiDBLite consensus disorder prediction 290 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03708 Vifa-Chr5 1193727263 1193731118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03708 1 912 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 30.647 3.73e-99 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03708 - - tpra:123890979 1342.02