Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03704 ATGGTTTCCGATAATCAATTTCGTAGGATTCTTAGTTTTGGGTCGAATCAGAATCTTGGTGTTACAAAACAAGCATCAAATAGTGGCCTTAAAAAAATGATTAACGCTCTAAAGATGAATGATCACGACTCGCTCCTCATAGAATCTTACATTCGAGAAGTGGTAAAAGATGAGGTCGTAAGAAAACTCCAAGAGCACTTATTTTCAAGAGACAAGAATAATGATGCTGGCAAATCTGGATCTAGATTCTTAGAGTTGTGTTTTATGAATAACAATAAGTTGCCAATTATGACTTATACTAAAACTAATATAATTCCAAAGGATGAACTATTTCAAGTTGCATTATTTGATGTTAGATCTAAGTCAATAGTCAACGATGGTCCTTTCTCTTCAATAAAGATAGAGATTTGTCCCATCAAGGGTGAGTTTGAATTTGTTGATGATGAAGATTGGACTGAAAATGAATTCAATGATAATATCTTGCATGAAAGAGAGAATAAAGAACCATTGTTGGTTGGAGACACGTTTGTTACTCTTGAAAACGGAGTTGCTTCTATTTCTAAAATTATGTTCACAGATAACTCTGGATGGGTAAAAAACAAAAAGTTCAGTTTAGGAGCAAAAGCTATGGAAAACGGAGAGATCATTAAGGAAGGTAGAAGTAAAGCTTTTAGGGTCAAAGATGTCAGAGGAGAAGCTTACAAGAAACATTATCCTCCATACTTGAAGGATGATGTGTGGCGTTTGAAGAAAATTTCTGAAAATGGACCATTCCGTGACCGACTCCGTAGCAACGGAATTCATACTGTTAAGGATCTGTTGAGGTTACTCATAACCAATGAATCTTCATTACGTGAGAAATTTGGAAAAATTCAGAAGAAATGCTGGTATGATATTATCGAACATGCCCGGTCATGTATTGTAGATGATTACATGCTTTATAGCTATGAGATGATTGGAGAACCAATACTGCTTCTATTCAATGTGATCTATGAAGTTGTTGGTGTGACATTTGATACACAAAAGTTTTATTTACCCGATGATCTCACACTCACACCTAACCAGAAGAATTTGGTAGAAATTGTGAAGAAAGATGCATACAAAAACATTGAAAATTTAAAAGCAATTGATGAGGGTACATTGAACTCCATAAGCTTAGAAGCATGTATAAAATCAACACAAGAACAAGATGTGCAACATATTGATATCTCTGCAGAGAATGGTAATGATGGAATGCAAAATATTGAAATGAATGTTGATCCGGTGGAAGACATAGGAGAAATACCAGAAAACAATTATTGTCATTCAATAGAGAATCTCATAAATGTTGGTTATTTTGAAGGAGCTGAGTGGAGCACTTTAGTTGATTTACTGAGTCCTGATCCATTTATCTCTAGTTCAAATGTTAATGATGGAACGCAAAATGTTGAAATCAATGTTGATCGAGAGCCTGACATTAGAGAAATACCAGGAAACAGTTATGATGTTTTAGATGGTAATTTTGATGAAGGTGAGTGTAGCACTTTGGTTGATATGGTAATATCAAACATTGAGAAACCAAAAGCAGTGTGGTGTAAGATTCGTGCTATTGTGAAATGGAAAATATCAGGGAAAAGAAGAGTTGCAGCAGCTAGCCTAGAGGAATGA 1647 0.3491 MVSDNQFRRILSFGSNQNLGVTKQASNSGLKKMINALKMNDHDSLLIESYIREVVKDEVVRKLQEHLFSRDKNNDAGKSGSRFLELCFMNNNKLPIMTYTKTNIIPKDELFQVALFDVRSKSIVNDGPFSSIKIEICPIKGEFEFVDDEDWTENEFNDNILHERENKEPLLVGDTFVTLENGVASISKIMFTDNSGWVKNKKFSLGAKAMENGEIIKEGRSKAFRVKDVRGEAYKKHYPPYLKDDVWRLKKISENGPFRDRLRSNGIHTVKDLLRLLITNESSLREKFGKIQKKCWYDIIEHARSCIVDDYMLYSYEMIGEPILLLFNVIYEVVGVTFDTQKFYLPDDLTLTPNQKNLVEIVKKDAYKNIENLKAIDEGTLNSISLEACIKSTQEQDVQHIDISAENGNDGMQNIEMNVDPVEDIGEIPENNYCHSIENLINVGYFEGAEWSTLVDLLSPDPFISSSNVNDGTQNVEINVDREPDIREIPGNSYDVLDGNFDEGECSTLVDMVISNIEKPKAVWCKIRAIVKWKISGKRRVAAASLEE 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03704 548 PANTHER OS02G0177800 PROTEIN 26 418 IPR012416 GO:0005516
Vifa5g03704 548 Pfam Calmodulin binding protein C-terminal domain 313 374 IPR046829 -
Vifa5g03704 548 Pfam Calmodulin binding protein central domain 242 306 IPR046830 -
Vifa5g03704 548 Pfam Calmodulin binding protein-like N-terminal domain 84 228 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03704 Vifa-Chr5 1192782410 1192784559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03704 24 381 Calmodulin-binding Proteins AT5G26920 35.946 1.03e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03704 - - mtr:25499645 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03704 5 1192782410 1192784559 Vifa5g03704 5 1192782410 1192784559 ECH