Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03702 ATGCTTGCTTGCTTGGCCAACAAAAGATATTTTCTAACGTCTGTTTTACTCCATCTCCCTGTCTCTTCGGTTTTCCATTACAAACAACATTCCAAGAAGACGGTTTGGAAGCAATCTGAGGATAAGCGGGACATAGCAGAAGAATGGAGAAAGTTGCATGCAGAGGCTAAGAGGAGGAAAGAGGAAGCTGAAAGTTCTTCAAGCAGGAGTTGCCAAAAAATTACACGTGCTGAACTTATGGACAAATACTATGAGTATGTCGAAAGAGAGGAATCGTACGAACTCAGAACAGGAAAGGTGAGAAGTTGTCTATCATGGGAAAAGTACTTTGAAATAGCCAGAGAGGAGGGATGGCTTACTGACATATCAGACGATGAACCTGAACAGAATTCCACTAATGAAGCAATGGAATCAGCGGGCGATGTCGAGGAGAACAACACTACTGATGCTGCTGATGATGTTCAACCTCCTGCCATGCAAGAGAAACTTGTTTGCAGATGGCAGAAAGTTGTTAAGAGCAGCAGCCAGATAAAAAATCAAGTTCTTCACTTTCCAGCAGCAGTCATCAAGGAAATCTTCATGGAACCAAGATCATATATTGATCTTCATGACACAGACTCGGGTATTACGTACCAATGTGTTTTCAAATCCAGGGAGAACATGACGGAGAAGTTTCTGTCAAGGGGCTGGTTAAAATTTGCAAAGGAGAAAGAGCTGTCGAAAGGTGACGTTCTCTTATTCAGTGTAGAGCATCCTCCTGTGGAACGTATATTGGTCAAAGTTGAGAGAGGGAAGCATTGA 801 0.427 MLACLANKRYFLTSVLLHLPVSSVFHYKQHSKKTVWKQSEDKRDIAEEWRKLHAEAKRRKEEAESSSSRSCQKITRAELMDKYYEYVEREESYELRTGKVRSCLSWEKYFEIAREEGWLTDISDDEPEQNSTNEAMESAGDVEENNTTDAADDVQPPAMQEKLVCRWQKVVKSSSQIKNQVLHFPAAVIKEIFMEPRSYIDLHDTDSGITYQCVFKSRENMTEKFLSRGWLKFAKEKELSKGDVLLFSVEHPPVERILVKVERGKH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03702 266 SUPERFAMILY DNA-binding pseudobarrel domain 167 253 IPR015300 -
Vifa5g03702 266 CDD B3_DNA 168 247 IPR003340 GO:0003677
Vifa5g03702 266 Pfam B3 DNA binding domain 167 260 IPR003340 GO:0003677
Vifa5g03702 266 MobiDBLite consensus disorder prediction 132 153 - -
Vifa5g03702 266 ProSiteProfiles B3 DNA-binding domain profile. 167 265 IPR003340 GO:0003677
Vifa5g03702 266 MobiDBLite consensus disorder prediction 120 153 - -
Vifa5g03702 266 Gene3D - 144 263 IPR015300 -
Vifa5g03702 266 SMART B3_2 167 262 IPR003340 GO:0003677
Vifa5g03702 266 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03702 Vifa-Chr5 1192773078 1192774396 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g03702 B3 2.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03702 - K22410 mtr:120580491 59.6918