Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03698 ATGGTATCTGAAAAACAATCTGGTAAGGATCACAAAGGCAGTAGTAAGATTCCTAGTCATGTGCCGAAATGGAATCTTGGTGTTACAAAACAAGCATCAATAAGAGAAAAGGATAATGAAGTTGGCAAATCTGGAACCAGATCCTTAGAGTTGCGCTTTATTAATGATGATAAGTTGCCAAATACGACATTTACTAAAACCAATATAACTCCAAAGAACGAACCATTTCAAGTTGCATTATTTGATGTTAGATCTAAGTCAATAGTCAACGATGGTCCTTTCTCTTCAATAAAGATACAGATTTGTCCCATCCAGGGAAAGTTTGAATCTTGTGATGATGAAGATTGGATTCAAACTGAGTTCAATGATAATATCTTGCATCAAAGAGAGAATAAAGAGCCGTTGTTGGTTGGAGATAGGATTGTTCCTCTTAAAAATGGAGTTGCTTCTATTTCTAAAATCATCTTCACTGATAATTCTGCATGGGTAAGAAGCAAAAAGTTCAGGTTGGGAGCAAGAGCTATGAAAAATGGAGAGATTATTAAGGAAGGTATAAGTCAAGCTTTTAGGGTCAAACATATCAGAGGAGAAGCTTACAAGAAACACTATCCTCCATACTTGAAGTTGATGGATGATGTGTGGCGTTTGGAGAAAATAGCTAAAGATGGACCGTACCACAAGCGACTCCATAACAACGGAATTCATACTGTTAAGGATCTGTTGAGGTTACTCATAACCAATGAATCTTCATTACGTGAGAAATTTGAAAAAATTCAGAAGAAGTGCTGGTCTGATATAATCGAACATGCCCGGTCGTGTGTTGTAGATGATTACATGCTTTATAGCTATGCGATTGGAGAACCAATACTGCTTCTATTCAATGTGATCTATGAAGTTGTTGGTGTGACATTTGATGCACAAAAGTTTTATTTACCAGATGATCTCAGACTCACACCCATCCAGAAGAATTTGGTTGAAATGGTGAAGAAAGATGCATACAAAAACATTGAAAATTTAAAAGCAATTGATGAGGGTACATTGAACTCCATAAGCTTAGAAGCATGTATAAAATCAACACAAGAACAAGATGTGCAACATATTGATATCTCTGCAGAGAATGGTAATGATGGAATGGAAAATATTGAAATGAATGTTGATCCGGTGGAAGACATAGGAGAAATACCAGAAAACAATTATGGTCATTCAATAGAGAATCTCATAAATGTTAGTTATTTTGAAGGAGCTGAGTGGAGCACTTTAGTTGATTTACTGAGTCCTGATATGGAGATATCAAACAGTGAGAAACCAAAAGCAGTGTGGTGTAAGATTCGTGCTGTTGTGAAATGGGGAATAACAGTGAGAAGAGTTGCAGCTGCCAAGAGGAATGAACATTTGTGTTGTTATAAGGTTTATGATATCAGTGCTATTTTCTAA 1434 0.3612 MVSEKQSGKDHKGSSKIPSHVPKWNLGVTKQASIREKDNEVGKSGTRSLELRFINDDKLPNTTFTKTNITPKNEPFQVALFDVRSKSIVNDGPFSSIKIQICPIQGKFESCDDEDWIQTEFNDNILHQRENKEPLLVGDRIVPLKNGVASISKIIFTDNSAWVRSKKFRLGARAMKNGEIIKEGISQAFRVKHIRGEAYKKHYPPYLKLMDDVWRLEKIAKDGPYHKRLHNNGIHTVKDLLRLLITNESSLREKFEKIQKKCWSDIIEHARSCVVDDYMLYSYAIGEPILLLFNVIYEVVGVTFDAQKFYLPDDLRLTPIQKNLVEMVKKDAYKNIENLKAIDEGTLNSISLEACIKSTQEQDVQHIDISAENGNDGMENIEMNVDPVEDIGEIPENNYGHSIENLINVSYFEGAEWSTLVDLLSPDMEISNSEKPKAVWCKIRAVVKWGITVRRVAAAKRNEHLCCYKVYDISAIF 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03698 477 Pfam Calmodulin binding protein C-terminal domain 280 340 IPR046829 -
Vifa5g03698 477 MobiDBLite consensus disorder prediction 1 42 - -
Vifa5g03698 477 MobiDBLite consensus disorder prediction 1 17 - -
Vifa5g03698 477 PANTHER OS02G0177800 PROTEIN 38 384 IPR012416 GO:0005516
Vifa5g03698 477 Pfam Calmodulin binding protein central domain 209 273 IPR046830 -
Vifa5g03698 477 Pfam Calmodulin binding protein-like N-terminal domain 49 192 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03698 Vifa-Chr5 1191974802 1191976648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03698 33 347 Calmodulin-binding Proteins AT5G26920 38.871 1.45e-63 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03698 - - mtr:25499645 462.611