Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03697 ATGGTATCTGATAATCAATTTCCTGGGATTTCTAGTAATGGGTCGAAATGGAATCTGGGTGTTAGAAAACAAGCATCAAATAGTGGCCTTGAAAAAATCATGGAATCCTTCTTTCGAGGAGTGATAAGAGATGGGGTTGAAAGAAAATTCCAAGAGCACTTATTTACAAGAGAAAAGATTAATGAAGGTGGAAGATCTGGAGCCAGATCCTTAGAGTTGTGTTTTATTGATAATAACAAGTTGCCAATTACGACTTTTACTAAAACTAATATAATTCCAAAGGATGAACCATTTCAAGTTGCATTATTTGATGTTAGATCTAAGTCAATAGTCAACTATGGTCCTTTCTCTTCAATAAAGATACAGATTTGTCCCATCCAGGGAAAGTTTGAATCTTGTGATGATGAAGATTGGATTCAAACTGAGTTCAATGATAATATCTTGCATCAAAGAGAGAATAAAGAACCATTGTTGGTTGGAGATACGTTTGTTACTCTTGAAAATGGAGTTGCTTCTATTTCTAAAATTATGTTCAATGATAACTCTAGCTGGGTAAAAAGCGGAAAGTTCAGTTTAGGAGCAAAAGCTATGAAAAATGGAGACAATATTAAGGAAGGTAGAAGTCAAGCTTTTACGGTCTTGGATATAAGAGGAGAAGCTTACAAGAAACATTATCCTCCATACTTGAAGGATGATGTGTGGCGTTTGGAGAAAATTTCTGAAAAAGGACCATTCCGTGACCGACTCCGTAGCAACGGAATTCATACTGTTAAGGATCTGTTGAGGTTACTCATAACCAATGAATCTTCATTACGTGAGAAATTTGGAAAAATTCAGAAGAAATGCTGGTATGATATTATCGAACATGCCCGGTCGTGTGTTGTAGATGATTACATGCTTTATAGCTATGAGATGATTGGAGAACCAATACTGCTTCTATTCAATGTGATCCATGAACTTGTTGGTGTGACATTTGATACACAAAAGTTTTATTTACCAGATGATCTCAGACTCACACCCATCCAGAAGAATTTGGTAGAAATGGTGAAGAAAGATGCATACAAAAACATTGAAAATTTAAAAGCAATTGATGAGGGTACATTGAACTCCATAAGCTTAGAAGCATGTATAAAATCAACACAAGAACAAGATGTGCAACATATTGATATCTCTGCAGAGAATGGTAATGATGGAATGCAAAATATTGAAATGAATGTTGATCCGGTGGAAGACATAGGAGAAATACCAGAAAACAATTATGGTCATTCAATAGAGAATCTCATAAATGTTAGTTATTTTGAAGGAGCTGACTGGAGCACTTTAGTTGATTTACTGAGTTCTGAACCATTTATCTCTAGTTCAAATGTTAATGATGGAATGCAAAATGTTGAAATCAATGTTGATCGAGAGCCTGACATTAGAGAAATACCAGGAAACAGTTATGATGTTTTAGATGGTAATTTTGATGAAGGTGAGTGTAGCACTTTGGTTGATATGGTAATATCAAACATTGAGAAACCAAAAGCAGTGTGGTGTAAGATTCGTGCTGTTGTGAAATGGAAAATATCAGGGAAAAGAAGAGTTGCAGCAGCTAGCCTAGAGGAATGA 1608 0.3532 MVSDNQFPGISSNGSKWNLGVRKQASNSGLEKIMESFFRGVIRDGVERKFQEHLFTREKINEGGRSGARSLELCFIDNNKLPITTFTKTNIIPKDEPFQVALFDVRSKSIVNYGPFSSIKIQICPIQGKFESCDDEDWIQTEFNDNILHQRENKEPLLVGDTFVTLENGVASISKIMFNDNSSWVKSGKFSLGAKAMKNGDNIKEGRSQAFTVLDIRGEAYKKHYPPYLKDDVWRLEKISEKGPFRDRLRSNGIHTVKDLLRLLITNESSLREKFGKIQKKCWYDIIEHARSCVVDDYMLYSYEMIGEPILLLFNVIHELVGVTFDTQKFYLPDDLRLTPIQKNLVEMVKKDAYKNIENLKAIDEGTLNSISLEACIKSTQEQDVQHIDISAENGNDGMQNIEMNVDPVEDIGEIPENNYGHSIENLINVSYFEGADWSTLVDLLSSEPFISSSNVNDGMQNVEINVDREPDIREIPGNSYDVLDGNFDEGECSTLVDMVISNIEKPKAVWCKIRAVVKWKISGKRRVAAASLEE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03697 535 PANTHER OS02G0177800 PROTEIN 32 405 IPR012416 GO:0005516
Vifa5g03697 535 Pfam Calmodulin binding protein central domain 229 293 IPR046830 -
Vifa5g03697 535 Pfam Calmodulin binding protein C-terminal domain 300 361 IPR046829 -
Vifa5g03697 535 Pfam Calmodulin binding protein-like N-terminal domain 71 215 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03697 Vifa-Chr5 1190138238 1190140326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03697 21 368 Calmodulin-binding Proteins AT5G26920 38.827 3.59e-68 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03697 - - mtr:25499645 464.536