Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03696 ATGAGAGAAGTCTGGCCTCGGCGGCGATATGAGCATGAAGAAGATGCGATGAAGCAGCCGTTTGCAGAAGAGGAAGAGGAGAGTTCAGTAACAGAAACTGGTTTCCCAACAGAAGGTAACCGATTTCCTTCGCGATTTTTACATTCTAAAGTTGTTGGAATTCAATTCCTCGAAGCAGAAACCAGTTCCCCTATTCCTGGAAACCGGTTTCCACTAGAAAATGCAGAAAATCAACAGATTGCAGAACCAACCACGCATCCGATCGAATTTGAGAATGGTAAGCAAGCTCGTAAGGATCACAAACGCAGTAATAAGGTTCCTATTCTTGGGTCGAAACGGAATCATGGTGTTACAAAACAAACATCAAATAGACTTAAACGTATGCTTAAAAGGATGAATGCTCGTGATTCCCTCCTCATGAAATCTTTCATTCGAAGAGAGGTGAGAGATGAGGTTGAGAGAAAATTCCAAGAGCTCTTAGTTTCAAGAGAAAAGATTAATGAAGTTGGCAAATCTGGAACCAGATCCTTAGAGTTGCGCTTTATTAATGATGATAAGTTGCCAATTTCGACATTTACTAAAACCAATATAACTCCAAAGAACGAACCACTTCAAGTTGCATTATTTGATGTTAGATCTAAGTCAATAGTCAATGAGGGTCCCTTGTCTTCAATCAAGATACAGATTTGTCCCATCCAGGGAAAGTTTGAATCTTGTGATGATGAAGATTGGATTCAAACTGAGTTCAATGATAATATCTTGCATCAAAGAGAGAATAAAGAGCCGTTGTTGGTTGGAGATAGGATTGTTGCTCTTAAAAATGGAGTTGCTTCTATTTCTAAAATCATCTTCACTGATAATTCTGCATGGGTAAGAAGCAAAAAGTTCAGGTTGGGAGCAAGAACTATGAAAAATGGAGAGATTATTAAAGAAGGTATAAGTCAAGCTTTTAGGGTCAAACATATCAGAGGAGAAGCTTTCAAGAAACATTATCCTCCTCCATTCTTGAACGACTATGTGTGGCGTTTGAAGCTAATTTCTAAAAATGGACCATTCCACAAGCGACTCCGTGACTACGAAATTCATACGGTTAAGGATCTTTTGAGGTTACTCATAATCAATGAAGCTTCACTACATCAGAAATTTGGCAAAATTCAGAACGAGTGCTGGTCTGATATTATCGAACATGCCCGGTCGTGTGTTGTGGATGATTTCAAGCTTTACGGCTATGAGATGATTGGACAACCAATACTTCTTCTGTTCAATGTGATCTATGAACTTGTTGGTGTGACATTTGATGCACAAGAGTTTTATTTACCAGATGATCTCACACTCACACCCAACCAGAAGAATTTGATAGAAACTGTGAAGCAAGACGCATACCAAAACATTGAAAAGTTAAAGGCGATTCACGAGGCTGTATTGAACTCCATAAGCTTAGAAGCATGTATAAAATCAACGCAAGAAAAAGATCTGCAACATTTTGATATCTCTATAGCAAATTTTGATGGTGGAATGCAAAATGTTCAAATCATTGCTGATCCAGTGCCTGACATTAATGAAATGCCACAGATCAGTTATGATGCTTTACTTGATTTTTTAGATGGAGCTGAGAGTAGCACTTTTGTTGATTTACTGAATTCTGATATGGAGATATCAAACAGTGAGAAACCAAAAGCCTTGTGGTGTAAGATTCGTGCTGTTGTGAAATGGGGAATATCAGTGAGAAGAGTGAAGAGAGATGTGTAA 1749 0.3842 MREVWPRRRYEHEEDAMKQPFAEEEEESSVTETGFPTEGNRFPSRFLHSKVVGIQFLEAETSSPIPGNRFPLENAENQQIAEPTTHPIEFENGKQARKDHKRSNKVPILGSKRNHGVTKQTSNRLKRMLKRMNARDSLLMKSFIRREVRDEVERKFQELLVSREKINEVGKSGTRSLELRFINDDKLPISTFTKTNITPKNEPLQVALFDVRSKSIVNEGPLSSIKIQICPIQGKFESCDDEDWIQTEFNDNILHQRENKEPLLVGDRIVALKNGVASISKIIFTDNSAWVRSKKFRLGARTMKNGEIIKEGISQAFRVKHIRGEAFKKHYPPPFLNDYVWRLKLISKNGPFHKRLRDYEIHTVKDLLRLLIINEASLHQKFGKIQNECWSDIIEHARSCVVDDFKLYGYEMIGQPILLLFNVIYELVGVTFDAQEFYLPDDLTLTPNQKNLIETVKQDAYQNIEKLKAIHEAVLNSISLEACIKSTQEKDLQHFDISIANFDGGMQNVQIIADPVPDINEMPQISYDALLDFLDGAESSTFVDLLNSDMEISNSEKPKALWCKIRAVVKWGISVRRVKRDV 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03696 582 PANTHER OS02G0177800 PROTEIN 101 520 IPR012416 GO:0005516
Vifa5g03696 582 MobiDBLite consensus disorder prediction 1 42 - -
Vifa5g03696 582 MobiDBLite consensus disorder prediction 82 121 - -
Vifa5g03696 582 MobiDBLite consensus disorder prediction 91 106 - -
Vifa5g03696 582 Pfam Calmodulin binding protein C-terminal domain 406 468 IPR046829 -
Vifa5g03696 582 Pfam Calmodulin binding protein-like N-terminal domain 177 320 IPR046831 -
Vifa5g03696 582 Pfam Calmodulin binding protein central domain 336 400 IPR046830 -
Vifa5g03696 582 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03696 Vifa-Chr5 1189523466 1189534560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03696 126 472 Calmodulin-binding Proteins AT5G26920 37.853 8.73e-68 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03696 - - mtr:25499645 476.863