Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03694 ATGGGTAATCTTTTGAAGGGGCGGCAGAGGAGTGTTTTTCGGCGACGGTTCCAAGCAGTTGTTCAGGGAACAGAGTTAAATGAATTTAATCCTAGTGGGCGATATGTAACCTCAGAATTGTGGAACAATGCTGAGGACAGAAGAGCAACTCTGCAGGAAGGAATACAATTTCTGTTGGACAACTCATCAAACAAACGCGAGAGGGGAAAAGCTACCATGGGAAGAAGAAGAAACTCAAGAAAGTGCTTAGTTAAGGAAGAATTTCTAGCGTGGGACAATCAAACTGATGTTTCATACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATTTTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGTGTTGTTGTAAAGGAAGGTGATATTGTAGAGGTTCGAAATGGACATGTTGTAGTTAATGGGATTGAAAGGGATGAGAAGTTTATAAATGAAGCGCCGAAATATGAAATGAAACCAATAAAAACTCCCTTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCACATGTGTGGGGCCCCCTGTCGGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGCCGCCACAGTTGCTAAGGGAGGGTGCCCTGCTGAAACCAAGCCGGAGACTACCAGTACTACTCTAGCATCTCAATGGTGA 720 0.4236 MGNLLKGRQRSVFRRRFQAVVQGTELNEFNPSGRYVTSELWNNAEDRRATLQEGIQFLLDNSSNKRERGKATMGRRRNSRKCLVKEEFLAWDNQTDVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVVKEGDIVEVRNGHVVVNGIERDEKFINEAPKYEMKPIKTPFFVMGDNRNNSYDSHVWGPLSAKNIIGRSVFRYWPPNRIAATVAKGGCPAETKPETTSTTLASQW 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03694 239 Pfam Signal peptidase, peptidase S26 96 208 IPR019533 GO:0004252|GO:0006465
Vifa5g03694 239 CDD S26_SPase_I 97 202 IPR019533 GO:0004252|GO:0006465
Vifa5g03694 239 Pfam XH domain 18 66 IPR005379 -
Vifa5g03694 239 NCBIfam signal peptidase I 98 210 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa5g03694 239 ProSitePatterns Signal peptidases I signature 3. 175 188 IPR019758 GO:0004252|GO:0016020
Vifa5g03694 239 SUPERFAMILY LexA/Signal peptidase 99 214 IPR036286 -
Vifa5g03694 239 Gene3D Umud Fragment, subunit A 100 215 - -
Vifa5g03694 239 PRINTS Bacterial leader peptidase 1 (S26A) family signature 170 189 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa5g03694 239 PRINTS Bacterial leader peptidase 1 (S26A) family signature 129 141 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa5g03694 239 PANTHER SIGNAL PEPTIDASE I 97 214 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03694 Vifa-Chr5 1189235369 1189239078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03694 97 209 MADS-box Gene Family AT1G29960 30.973 2.17e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03694 K03100 - gmx:100815810 224.942