Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03656 ATGGATGATGATTCAAAAGAAGAAGAGGAATTGGCTACCAACATAGTAATGATAGGTGTCTCCATGTTACTTCTTGCATTGGTTACTATTGCTGTTTTTGCAAACCTAGGTGGTGGCACCAAAGAAGAAACAAATTTTAAGAGCATTAACTTTATCTGTGCTAAAACAGAATCACCAGAAACTTGTCTTCATGTCTTAAAAAATATAGGCGAAAGAGCTTCCCCTTTGGATTACATTAATGCTGCGATTAATGCAACTCTTGAAGAATTAATGATAGTTAATATACCAAAACCTGATTCTGAAAAATGCTTAACTTCTTTGCAGAAGAAATCGTATAGAGATTGTTTGGAGTTGTTGAATATGGGAAAAGATGAGCTTGAAAATTTGAACTTTACCGCGAATTTGTCTAGGGAATCAAAAGAAATGATCAATAGCCTAAGCGCGATCATTTCGTATCAACAAACTTGTTCTAACGAGTTGATGAGAACAAATAATTTTGATATTTTAGGATATTCTTTGAAGTTACCTATTCTTCTTTCAAGGATTACATTAACAATTGTTGATACTTTCTTCGAGAAGCCGGTTTTGGACGAAGGGTTTGAGAAAATGTTCACGGGAGCGAACCATGAAGCTATGGAAGTTGATCATGAGAAGAAAAGACTAATCGTTGCTCAAGAAGGCCGCGGCCATTTTACAACAATAACCGAATCACTCAATGCTTGTGCAAGGAATATAGAATCTTCATGTGTTATTTATGTGATGAAAGGCGTGTATGAAGAGAGAGTTGTGATACCTAAGAATTTAGAATATGTTTTCATGTATGGCGATGGGCCTAGGAAAACCATTGTCACCGGAATCAATACACAAGGCTCGAGGATTGTTACAACTCCATTTCGTTCTGCTACTTTTGTGGTGAAAGGGAAAGGATTCATTTGCAAAGATATGGGATTCAGTGCACCTGCTAATATAGCAGGTGCACCCGCACTTGTTGTGTTTTGTGATCATGCAGCATTCTTCAACTGCAAAATTGATGGCAACGAAGGAAGCTTATACGCGGTGGCGCATCGCCAATTCTATGGAAACTGCGAAATTCGTGGAAGTGTAGACATTATCAAAGGAGACTCAGCGACTATAATTCAAAACTCACGAATCATAGTGAAGCGTCAAAATTCTTCTGTTGTTCCAAGGAAAAAAGCGGTGAGTTTTCAATCAAGAGTAGACAAACATGAAAGTACTGGTTTCGTGATGCAAAACTGCACCATTGAAGCAGAAGAATGCGAAACCGATGATAATAATAATAATAGTCTTGTTGGCTCGACGTGTTTGGGAATACCGTGTAATGAACATTCGAGAACAGTCGTAATGGAATCGTTTCTTGGTAATGTGATAAGCCCGGGAGGTTGGTGTAAATGGAGTAATAACTATGGAGTTGGTACAGCAAATTTTATTGAGTATAATAATAGAGGAATTGGTGCAAGAACTGGTAAGAGGGTACATTGGGAGAGTTATAGAGATGTTTCTCAGAATCGGAAAAGTGAAATGATGAAGTTTACAGCTGATGAGTTTATTCAAGCAGATCAATGGTTGAAAAATACTAGTATTCCATATCAATCTGGACTTTTCTTTCATAATTAG 1635 0.3737 MDDDSKEEEELATNIVMIGVSMLLLALVTIAVFANLGGGTKEETNFKSINFICAKTESPETCLHVLKNIGERASPLDYINAAINATLEELMIVNIPKPDSEKCLTSLQKKSYRDCLELLNMGKDELENLNFTANLSRESKEMINSLSAIISYQQTCSNELMRTNNFDILGYSLKLPILLSRITLTIVDTFFEKPVLDEGFEKMFTGANHEAMEVDHEKKRLIVAQEGRGHFTTITESLNACARNIESSCVIYVMKGVYEERVVIPKNLEYVFMYGDGPRKTIVTGINTQGSRIVTTPFRSATFVVKGKGFICKDMGFSAPANIAGAPALVVFCDHAAFFNCKIDGNEGSLYAVAHRQFYGNCEIRGSVDIIKGDSATIIQNSRIIVKRQNSSVVPRKKAVSFQSRVDKHESTGFVMQNCTIEAEECETDDNNNNSLVGSTCLGIPCNEHSRTVVMESFLGNVISPGGWCKWSNNYGVGTANFIEYNNRGIGARTGKRVHWESYRDVSQNRKSEMMKFTADEFIQADQWLKNTSIPYQSGLFFHN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03656 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 188 IPR035513 -
Vifa5g03656 544 CDD PMEI-like_3 52 190 - -
Vifa5g03656 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 191 IPR035513 -
Vifa5g03656 544 PANTHER PECTINESTERASE 20 532 - -
Vifa5g03656 544 SMART PMEI_2 44 186 IPR006501 GO:0004857
Vifa5g03656 544 Pfam Pectinesterase 221 526 IPR000070 GO:0030599|GO:0042545
Vifa5g03656 544 SUPERFAMILY Pectin lyase-like 219 538 IPR011050 -
Vifa5g03656 544 Gene3D - 218 542 IPR012334 -
Vifa5g03656 544 Pfam Plant invertase/pectin methylesterase inhibitor 48 160 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03656 Vifa-Chr5 1179555399 1179557288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03656 47 541 Carbohydrate Esterase AT2G26450 33.462 1.91e-77 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03656 K01051 - gmx:102665007 590.497