Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03655 ATGGGCGGAGTTGGAGCAGCAGCACCGAATTCGGAGGTTCAATACACCACGGCGAAGATATCTGTGTGGTGGGATATAGAAAACTGTCACGTTCCCAAGGGTTTCGATCCTCACCAAATCGCTCAGAATATCAGTTCAGCGCTTGTTCGGATGAACTTCTGTGGTCCCGTTTCGATCTCTTCCTACGGCGATACGACTAGAATTCCTGCGTCTGTACAGCATGCTCTCTCCAGCACCGGAATTTCCCTCAATCATGTTCCTGCTGGTGTGAAAGATGCAAGTGATAAGAAGATCCTTGTCGACATGCTGTTTTGGGCAGTGGACAACCCTGCACCTGCAAATTATTTATTGATTTCAGTTGCAGCTGCGAAGAACGTATGGCTTTGGACTAGTCTCTTATCTGGAGGACCTCCATTATCTAATGGAGAATCACAACAGCTTGCTAATAGTAGCCTCCTATCATCTTCTGAAACTTTACAAGTTCCCGTTTCAAATGCCACTCAGACACAACAACAAGGGGGTCCCTACTCTGAAGTTCATGCTGGAAATTCAAAATTTCAAAATGGAGGAAGGGGATTTGATCCTAGATATCAGGGGAGACCGAATTGGAGAAACCCGAATCAACCAAATGGGTCCAAAGCCATGAGTCCACCCCCAGTTGGTCCTCAAGATAACCGTAATAACGTAAACAATTATCGACCTGGCAACTATAATCCAAACGTTCCTCATAGCGGATCCGCCACAAATTTTGTCCGCGCCAATTCTGATCAGTTATGGAGCAATAATGGTAATCAACATCCATATTCCCAACCATTAAGACCGAACGACTTTCCATTGCAGCCTCCTTTTGCACCTAGTAATTCATTTACTCCAAATTCCCATACTTTTGCAACTACACCGGTGCCACCTAGGACAAGTGGCCCCAATTTTGGTACAGGATCAAATACACCTTTGCCAAATATTGGTAATCTGAACATTTCTGGTCATCCTAATAATGCTCATAACCCCCGAACTGTTCCGCAACGGAGTGGAGAGTTGAAACCTAATCCTAAGGGTAGTGCTCCACTTCTGGTAAGATCAACAATCGAACAAAATGGACATATGGTGCATAGCAATAGCACGCAAGGCTATCCACATGGTCCAGAATATCAACCTACATCATCGGCAGCAATGGGGGTTGTATTACTTGCCCTTAACTCACTAAAAAATGCAAAGATGATGCCAACTGAGAAAAATATAACTGATAGCATCCGTTATGGAGATCCCAAGCATCGCAACACTGATGTTAAGAAGGCTCTGGAGAGTGCAATGGAACAGCAGATGGTGGTGAAACAGAATTTAGGTGCTCTGACGCTGTATGTTGGTAAGAATGATAAACTTTGGAAATGTGTAAATCCTTTAGGTGGAAATCCTAAACAGCACCCAAAAGAAATTTGGGATGAAATTCAAAATTTTTTAACAACCCCTGCTGGAAGATCAGCAATAATGGGTACACAGTGCAAGTATGAAGCAGGTATGGTGATAAAGAACATGTGCTTTAAAGATCTTGCTTTGGGCAACGTCCTTCAGATATTGAATATGTTGATTCTCCATAAAAAATGGATAGTTCATCAGCAGTCTGGCTGGCAACCACTCATCCTTACTCTCCCTGAGTCAAATCTCGTTTCAGCAGGGGTCACCGCTGGTGCATAA 1692 0.4385 MGGVGAAAPNSEVQYTTAKISVWWDIENCHVPKGFDPHQIAQNISSALVRMNFCGPVSISSYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISVAAAKNVWLWTSLLSGGPPLSNGESQQLANSSLLSSSETLQVPVSNATQTQQQGGPYSEVHAGNSKFQNGGRGFDPRYQGRPNWRNPNQPNGSKAMSPPPVGPQDNRNNVNNYRPGNYNPNVPHSGSATNFVRANSDQLWSNNGNQHPYSQPLRPNDFPLQPPFAPSNSFTPNSHTFATTPVPPRTSGPNFGTGSNTPLPNIGNLNISGHPNNAHNPRTVPQRSGELKPNPKGSAPLLVRSTIEQNGHMVHSNSTQGYPHGPEYQPTSSAAMGVVLLALNSLKNAKMMPTEKNITDSIRYGDPKHRNTDVKKALESAMEQQMVVKQNLGALTLYVGKNDKLWKCVNPLGGNPKQHPKEIWDEIQNFLTTPAGRSAIMGTQCKYEAGMVIKNMCFKDLALGNVLQILNMLILHKKWIVHQQSGWQPLILTLPESNLVSAGVTAGA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03655 563 CDD PIN_limkain_b1_N_like 19 119 - -
Vifa5g03655 563 MobiDBLite consensus disorder prediction 221 248 - -
Vifa5g03655 563 MobiDBLite consensus disorder prediction 288 339 - -
Vifa5g03655 563 PANTHER LIMKAIN B LKAP 121 444 IPR024768 GO:0005777|GO:0010468
Vifa5g03655 563 Pfam OST-HTH Associated domain 499 545 IPR025677 -
Vifa5g03655 563 MobiDBLite consensus disorder prediction 165 248 - -
Vifa5g03655 563 MobiDBLite consensus disorder prediction 165 184 - -
Vifa5g03655 563 MobiDBLite consensus disorder prediction 288 354 - -
Vifa5g03655 563 Pfam NYN domain 19 119 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03655 Vifa-Chr5 1179549097 1179552979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03655 11 205 C2H2 Transcription Factor Family AT5G61190 50.000 2.39e-58 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03655 - - gmx:100794608 869.381