Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03654 ATGGGCGGAGTTGGAGCAGCAGCACCGAATTCGGAGGTTCAATACACCACGGCGAAGATATCTGTGTGGTGGGATATAGAAAACTGTCACGTTCCCAAGGGTTTCGATCCTCACCAAATCGCTCAGAATATCAGTTCAGCGCTTGTTCGGATGAACTTCTGTGGTCCCGTTTCGATCTCTTCCTACGGCGATACGACTAGAATTCCTGCGTCTGTACAGCATGCTCTCTCCAGCACCGGAATTTCCCTCAATCATGTTCCTGCTGGTGTGAAAGATGCAAGTGATAAGAAGATCCTTGTCGACATGCTGTTTTGGGCAGTGGACAACCCTGCACCTGCAAATTATTTATTGATTTCAGCTGCGAAGAACGTATGGCTTTGGACTAGTCTCTTATCTGGAGGACCTCCATTATCTAATGGAGAATCACAACAGCTTGCTAATAGTAGCCTCCTATCATCTTCTGAAACTTTACAAGTTCCCGTTTCAAATGCCACTCAGACACAACAACAAGGGGGTCCCTACTCTGAAGTTCATGCTGGAAATTCAAAATTTCAAAATGGAGGAAGGGGATTTGATCCTAGATATCAGGGGAGACCGAATTGGAGAAACCCGAATCAACCAAATGGGTCCAAAGCCATGAGTCCACCCCCAGTTGGTCCTCAAGATAACCGTAATAACGTAAACAATTATCGACCTGGCAACTATAATCCAAACGTTCCTCATAGCGGATCCGCCACAAATTTTGTCCGCGCCAATTCTGATCAGTTATGGAGCAATAATGGTAATCAACATCCATATTCCCAACCATTAAGACCGAACGACTTTCCATTGCAGCCTCCTTTTGCACCTAGTAATTCATTTACTCCAAATTCCCATACTTTTGCAACTACACCGGTGCCACCTAGGACAAGTGGCCCCAATTTTGGTACAGGATCAAATACACCTTTGCCAAATATTGGTAATCTGAACATTTCTGGTCATCCTAATAATGCTCATAACCCCCGAACTGTTCCGCAACGGAGTGGAGAGTTGAAACCTAATCCTAAGGGTAGTGCTCCACTTCTGGTAAGATCAACAATCGAACAAAATGGACATATGGTGCATAGCAATAGCACGCAAGGCTATCCACATGGTCCAGAATATCAACCTACATCATCGGCAGCAATGGGGGTTGTATTACTTGCCCTTAACTCACTAAAAAATGCAAAGATGATGCCAACTGAGAAAAATATAACTGATAGCATCCGTTATGGAGATCCCAAGCATCGCAACACTGATGTTAAGAAGGCTCTGGAGAGTGCAATGGAACAGCAGATGGTGGTGAAACAGAATTTAGGTGCTCTGACGCTGTATGTTGGTAAGAATGATAAACTTTGGAAATGTGTAAATCCTTTAGGTGGAAATCCTAAACAGCACCCAAAAGAAATTTGGGATGAAATTCAAAATTTTTTAACAACCCCTGCTGGAAGATCAGCAATAATGGGTACACAGTGCAAGTATGAAGCAGGTATGGTGATAAAGAACATGTGCTTTAAAGATCTTGCTTTGGGCAACGTCCTTCAGATATTGAATATGTTGATTCTCCATAAAAAATGGATAGTTCATCAGCAGTCTGGCTGGCAACCACTCATCCTTACTCTCCCTGAGTCAAATCTCGTTTCAGCAGGGGTCACCGCTGGTGCATAA 1686 0.4383 MGGVGAAAPNSEVQYTTAKISVWWDIENCHVPKGFDPHQIAQNISSALVRMNFCGPVSISSYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISAAKNVWLWTSLLSGGPPLSNGESQQLANSSLLSSSETLQVPVSNATQTQQQGGPYSEVHAGNSKFQNGGRGFDPRYQGRPNWRNPNQPNGSKAMSPPPVGPQDNRNNVNNYRPGNYNPNVPHSGSATNFVRANSDQLWSNNGNQHPYSQPLRPNDFPLQPPFAPSNSFTPNSHTFATTPVPPRTSGPNFGTGSNTPLPNIGNLNISGHPNNAHNPRTVPQRSGELKPNPKGSAPLLVRSTIEQNGHMVHSNSTQGYPHGPEYQPTSSAAMGVVLLALNSLKNAKMMPTEKNITDSIRYGDPKHRNTDVKKALESAMEQQMVVKQNLGALTLYVGKNDKLWKCVNPLGGNPKQHPKEIWDEIQNFLTTPAGRSAIMGTQCKYEAGMVIKNMCFKDLALGNVLQILNMLILHKKWIVHQQSGWQPLILTLPESNLVSAGVTAGA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03654 561 MobiDBLite consensus disorder prediction 219 269 - -
Vifa5g03654 561 MobiDBLite consensus disorder prediction 284 337 - -
Vifa5g03654 561 CDD PIN_limkain_b1_N_like 19 119 - -
Vifa5g03654 561 PANTHER LIMKAIN B LKAP 14 442 IPR024768 GO:0005777|GO:0010468
Vifa5g03654 561 Pfam NYN domain 19 120 IPR021139 GO:0004540
Vifa5g03654 561 MobiDBLite consensus disorder prediction 163 182 - -
Vifa5g03654 561 MobiDBLite consensus disorder prediction 163 353 - -
Vifa5g03654 561 Pfam OST-HTH Associated domain 497 543 IPR025677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03654 Vifa-Chr5 1179549097 1179552979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03654 11 203 C2H2 Transcription Factor Family AT5G61190 49.123 5.99e-57 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03654 - - gmx:100794608 865.529