Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03644 ATGAAATCATGTCTTGATTCCACTTTCAGTTTGAATGTGAGAAAAACATGCATAGATTTGTACCAGTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTCGTAAGGAAAAGAAATGGGGTGAAATTGTTTCAGCACTAAAACTGGAAGGAAACAATGCAAGGTTATGTAGTCAGCTTCAAAAGCTCTATGGAAAGCTTCTATACAAATTTGAGAAATATTACTTCTACAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGGTTCATCTAAAAGGAAGCAGGGATCAACATCAACAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCAACGGGACGAAGTGGTTATCAAATATTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCGTTGATGACTGACAATAATAAACAGAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCCGTAGATTTGCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 822 0.3978 MKSCLDSTFSLNVRKTCIDLYQFYLEVTKRGGYHQVRKEKKWGEIVSALKLEGNNARLCSQLQKLYGKLLYKFEKYYFYRFPASQTATGSTKGSSKRKQGSTSTIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKQKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03644 273 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 119 - -
Vifa5g03644 273 MobiDBLite consensus disorder prediction 85 126 - -
Vifa5g03644 273 SUPERFAMILY HMG-box 111 184 IPR036910 -
Vifa5g03644 273 CDD ARID 18 74 - -
Vifa5g03644 273 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 125 193 IPR009071 -
Vifa5g03644 273 Gene3D High mobility group box domain 110 193 IPR036910 -
Vifa5g03644 273 ProSiteProfiles ARID domain profile. 1 78 IPR001606 GO:0003677
Vifa5g03644 273 Pfam HMG (high mobility group) box 129 186 IPR009071 -
Vifa5g03644 273 MobiDBLite consensus disorder prediction 85 110 - -
Vifa5g03644 273 CDD HMG-box_SF 129 184 - -
Vifa5g03644 273 SMART hmgende2 126 195 IPR009071 -
Vifa5g03644 273 Pfam ARID/BRIGHT DNA binding domain 14 74 IPR001606 GO:0003677
Vifa5g03644 273 SUPERFAMILY ARID-like 13 79 IPR036431 GO:0003677
Vifa5g03644 273 Gene3D - 5 99 IPR036431 GO:0003677
Vifa5g03644 273 SMART bright_3 2 79 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03644 Vifa-Chr5 1173919294 1173920572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03644 17 180 ARID Transcription Factor Family AT1G55650 24.762 2.80e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa5g03644 HMG_box 1.1e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03644 - - psat:127121142 283.878