Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03643 ATGAAATCATGTCTTGATTCCACTTTCAGTTTGAATGTGAGAAAAACATGCATAGATTTGTACCAGTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTCGTAAGGAAAAGAAATGGGGTGAAATTGTTTCAGCACTAAAACTGGAAGGAAACAATGCAAGGTTATGTAGTCAGCTTCAAAAGCTCTATGGAAAGCTTCTATACAAATTTGAGAAATATTACTTCTACAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGGTTCAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTGTCCCAATTAATGGATGATGGAGATTATCCGACAGAGGCAGAGATATCCAAGGACTGCCTTACCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCAACGGGAGGAAGTGGTTATCAAATATTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCGTTGATGACTGACAATAATAAACAGAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCCGTAGATTTTCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 900 0.4022 MKSCLDSTFSLNVRKTCIDLYQFYLEVTKRGGYHQVRKEKKWGEIVSALKLEGNNARLCSQLQKLYGKLLYKFEKYYFYRFPASQTATGSTKGSAKRKQGSTSSLSQLMDDGDYPTEAEISKDCLTKVTAIPEVLLQTPSKDKEKKKKRGCPTGGSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKQKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDFLTGLAIGEPK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03643 299 SUPERFAMILY ARID-like 13 79 IPR036431 GO:0003677
Vifa5g03643 299 MobiDBLite consensus disorder prediction 86 110 - -
Vifa5g03643 299 CDD ARID 18 74 - -
Vifa5g03643 299 Gene3D High mobility group box domain 136 217 IPR036910 -
Vifa5g03643 299 MobiDBLite consensus disorder prediction 86 112 - -
Vifa5g03643 299 SMART hmgende2 144 221 IPR009071 -
Vifa5g03643 299 ProSiteProfiles ARID domain profile. 1 78 IPR001606 GO:0003677
Vifa5g03643 299 Gene3D - 5 99 IPR036431 GO:0003677
Vifa5g03643 299 SUPERFAMILY HMG-box 140 210 IPR036910 -
Vifa5g03643 299 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 95 - -
Vifa5g03643 299 Pfam HMG (high mobility group) box 156 212 IPR009071 -
Vifa5g03643 299 CDD HMG-box_SF 156 210 - -
Vifa5g03643 299 Pfam ARID/BRIGHT DNA binding domain 14 74 IPR001606 GO:0003677
Vifa5g03643 299 SMART bright_3 2 79 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03643 Vifa-Chr5 1173900753 1173902032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03643 17 206 ARID Transcription Factor Family AT1G55650 26.728 5.06e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa5g03643 HMG_box 2.4e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03643 - - mtr:120577736 303.523