Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03636 ATGGAAAAATTCATCATCTATGTTCTCATATTTCTTATGAATTTACTCACTTTAGAACTCAGAGTAGAATCTGCTATTTGGCAACAAGCTCATGCAACTTTTTATGGTGGAAGTGATGCCTCAGGAACAATGGGAGGTGCATGTGGGTATGGAAATCTGAACATAGATGGATATGGAATAAAAACAGCTGCACTGAGTACTGTTTTGTTTAATGATGGCAAATCATGTGGTGGATGCTATCAGATTGTTTGTGATGCAAGAAAGGTCCCTCAATGGTGTCTCAGAGGCACTTCCATCACTATTACTGCCACAAACTTCTGTCCACCTAACTTGGCACTCCCTAATGACAATGGTGCCAAGTATAGAGCTGGAATTGTTCCCATCTTGTATAGAAGAGTTGGGTGCAGAAGAAGTGGAAACATAAGGTTTACTATAAATGGGAGAGATTATTTTGAGCTGGTGCTTATAAGCAACATAGGTGGAGGTGGAGAGATATCAAAAGTTTGGATAAAAGGGTCAAAAAAGAATAAATGGGAATCAATGTCAATGAATTGGGGTGCTAATTGGCAGAGTCTAAGTTATCTAAATGGTCAGAGTTTATCATTTAGAGTTCAACTCAAGAATGGAAAGACTCGTACAGCTATAAACGTTGCGCCTTCCAATTGGAGATTTGGCCAGTCTTTCAAAAGTAATGTTCAGTTTTGA 705 0.3872 MEKFIIYVLIFLMNLLTLELRVESAIWQQAHATFYGGSDASGTMGGACGYGNLNIDGYGIKTAALSTVLFNDGKSCGGCYQIVCDARKVPQWCLRGTSITITATNFCPPNLALPNDNGAKYRAGIVPILYRRVGCRRSGNIRFTINGRDYFELVLISNIGGGGEISKVWIKGSKKNKWESMSMNWGANWQSLSYLNGQSLSFRVQLKNGKTRTAINVAPSNWRFGQSFKSNVQF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03636 234 SMART dpbb_1 62 130 IPR007112 -
Vifa5g03636 234 SUPERFAMILY Barwin-like endoglucanases 26 158 IPR036908 -
Vifa5g03636 234 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 150 230 IPR007117 -
Vifa5g03636 234 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 140 IPR007112 -
Vifa5g03636 234 CDD DPBB_EXPA_N 27 135 - -
Vifa5g03636 234 PANTHER EXPANSIN-A15 17 231 IPR002963 GO:0009664
Vifa5g03636 234 PRINTS Expansin/Lol pI family signature 178 192 IPR007118 GO:0005576
Vifa5g03636 234 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Vifa5g03636 234 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vifa5g03636 234 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Vifa5g03636 234 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Vifa5g03636 234 Gene3D - 138 234 IPR036749 -
Vifa5g03636 234 Pfam Lytic transglycolase 62 109 IPR009009 -
Vifa5g03636 234 Gene3D - 18 136 IPR036908 -
Vifa5g03636 234 SUPERFAMILY PHL pollen allergen 137 230 IPR036749 -
Vifa5g03636 234 PRINTS Expansin signature 151 172 IPR002963 GO:0009664
Vifa5g03636 234 PRINTS Expansin signature 216 232 IPR002963 GO:0009664
Vifa5g03636 234 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Vifa5g03636 234 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Vifa5g03636 234 Pfam Expansin C-terminal domain 141 219 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03636 Vifa-Chr5 1173633397 1173634435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03636 4 234 Expansin Gene Family AT4G01630 68.924 6.80e-126 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03636 - - psat:127132523 458.373