Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03634 ATGGCTTCTTCATTCTCAACTCAATTTCTTCAATCTCACAACACACTTTCTCATCTCCAGGGTAATTTTAGACAAGATGTGTCTCTGTTTCAAAGGTCACAAACCGTATCACGGATTGGTTACACCAAATCATTGTCATCAAAATCACGTTTTTCTTTGAAGTTGTCGACCACGCAACAATCTGGAGCAAAGTCAATTAGATATAGCAGAGTTACATGTGCTGCTGCTGCTGAAAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGCTTCTTCGATGTAGATATTGGGGGTAAAGCTGTCGGCACAATCGTTTTGGGCTTGTTCGGAGAGGTTGCTCCTAAAACCGTTGAAAATTTCCGCGCTTTGTGCACAGGAGAAAAAGGATATGGTTACCAAGGATGCTCCTTCCATCGCGTAATCAAAGAATTCATGATTCAGGGAGGGGACTTCACTGAAGGAAATGGAACTGGCGGAAAGAGTATCTACGGTTCTAGTTTTGAAGATGAGAGTTTTGATTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCCAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTCCACTGTAAAGACTCCATGGTTAGACGATCGACATGTTGTGTTTGGACATGTCATTGAAGGAATGGATGTTGTGAGGACACTTGAGTCTCAGGAAACAAGCAGGTTAGATATCCCTGTGAAGCCTTGCAGAATTGTTAAATGCGGAGAATTGCCTCTAGATGGTTGA 765 0.4222 MASSFSTQFLQSHNTLSHLQGNFRQDVSLFQRSQTVSRIGYTKSLSSKSRFSLKLSTTQQSGAKSIRYSRVTCAAAAENVQELQAKVTTKCFFDVDIGGKAVGTIVLGLFGEVAPKTVENFRALCTGEKGYGYQGCSFHRVIKEFMIQGGDFTEGNGTGGKSIYGSSFEDESFDLKHVGPGVLSMANAGPNTNGSQFFISTVKTPWLDDRHVVFGHVIEGMDVVRTLESQETSRLDIPVKPCRIVKCGELPLDG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03634 254 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 133 150 IPR020892 GO:0003755|GO:0006457
Vifa5g03634 254 CDD cyclophilin_ABH_like 90 248 - -
Vifa5g03634 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Vifa5g03634 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 196 208 IPR002130 GO:0000413|GO:0003755
Vifa5g03634 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 150 IPR002130 GO:0000413|GO:0003755
Vifa5g03634 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 124 IPR002130 GO:0000413|GO:0003755
Vifa5g03634 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 209 224 IPR002130 GO:0000413|GO:0003755
Vifa5g03634 254 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 95 248 IPR002130 GO:0000413|GO:0003755
Vifa5g03634 254 FunFam Peptidyl-prolyl cis-trans isomerase 76 254 - -
Vifa5g03634 254 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 92 249 IPR002130 GO:0000413|GO:0003755
Vifa5g03634 254 SUPERFAMILY Cyclophilin-like 86 250 IPR029000 -
Vifa5g03634 254 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 90 250 - -
Vifa5g03634 254 Gene3D - 74 253 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03634 Vifa-Chr5 1173283461 1173285749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03634 103 247 U-box Gene Family AT5G67530 44.521 3.72e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03634 K03768 - gmx:100785805 378.637