Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03628 ATGAGAAAATCCAACACTTCAAATTCCTCTTCATCTATTAGCAGCAACACCAACAACCAACTTTTCATTTCAACAGCCTCTTCTCTCAACACACAACAACAACTTCCCACAGATCTTAGCCTTGGACTCACCATTTCCTCCACTCAACATTTTCATCTTGGTTCCTCTAATTCAAGGGGGCAAATGCAATGGCAACAAAACTATGAGTACAATGATCATAGTAGCTTCTTTGTGAAAGTGTACATGGAAGGCATTCCAATTGGAAGAAAACTCAATATACTTGCTCATCAAAATTACCATGAATTAGTCAAAACTCTTGAACACATGTTTGATACCACCATCCTATGGGGAAATGAGATGGATCAAGTGCAACCAGAAAGATGTCATGTGTTAACTTATGAAGATGAAGAAGGAGATTTGGTTATGGTTGGTGATGTTCCATGGAAGATGTTTTTGTCCACTGTGAAGAGGTTGAAGATCACAAGAGTTGACACATTTGGGTGCTAG 507 0.3886 MRKSNTSNSSSSISSNTNNQLFISTASSLNTQQQLPTDLSLGLTISSTQHFHLGSSNSRGQMQWQQNYEYNDHSSFFVKVYMEGIPIGRKLNILAHQNYHELVKTLEHMFDTTILWGNEMDQVQPERCHVLTYEDEEGDLVMVGDVPWKMFLSTVKRLKITRVDTFGC 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03628 168 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 163 IPR003311 GO:0005634|GO:0006355
Vifa5g03628 168 Pfam AUX/IAA family 65 162 IPR033389 -
Vifa5g03628 168 Gene3D - 69 167 - -
Vifa5g03628 168 SUPERFAMILY CAD & PB1 domains 67 160 - -
Vifa5g03628 168 ProSiteProfiles PB1 domain profile. 75 165 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03628 Vifa-Chr5 1171107559 1171108695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03628 79 160 B3 DNA Binding Superfamily AT4G23980 37.805 1.99e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa5g03628 AUX_IAA 4.5e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03628 K14484 - gmx:100783140 238.424