Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03626 ATGGAGAACCACCACCACAACCACCGTGAATTCTCCTTCTTAACCTCCTCCGGCGACTTCCTCCATAACAACACAGATCCTCCAATCAAAGAAATGAATCTCTTCTCATCATCACCTAACAACAACCAACAAGAAGATCAAGATCAACCGGTCAACACAGGACTGAATTTAACGTGTGCAAGTGCTACAAAGTCCAAAGCAGAAAATCCTAAGAATTCTGAAACCGAGCTGATAAGTACACTGCAAATTGAATTGAGGAAGGTGCAAGAAGAAAATCAGAAACTAAGAAATGTGTTGGAACAAATCACCATAAGCTATAGTCAATTACAAGCTCAATTATCCATCACTTTGCAGAAACAAAACCATGTTGATAATATGGAAGCAAATCATGTGATGAAATCATCTGAGCAAAAGACTATGAATGATGCATTGGTTTCGGTTGGAAAACAAGGTTGTCCTCCTGATCATGCAGCAAAAGATGTTGTTGAATGTTCTTCCTCGCACTCATCTAAAACTTTAGAACAAGACCTAACTCATTTCAGAAAAGCTAGGGTTTCCATACGAGCAAGATCAGAAGCTCCCATGATTAGTGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGGTAAGGGAAACCCTTGTCCTCGCGCCTACTATCGTTGCACTATGGCCGTAGGATGTCCAGTTCGCAAACAGGTCCAGAGATGTGCGGAAGACAAGACCGTGTTGATAACAACATACGAAGGCAATCACAACCATCCACTCCCACCAGCCGCAACTGCAATAGCAAATACCACATCAGCAGCTGCAGCAATGCTACTATCAAATTCTTCAACCTCCTCAACACTAAGCAAAGAATCAGCGCCATTTTTATCTGCATTCCCTTACGCTACAATATCAACCCTATCATCTACTCAACCATTTCCAACCATCACTCTCGACTTGACACACGGCCACAACCTTGCCATGCAACATAGCAGAATTCCCTTACCATTACAGCATCCACAACAACAACTACTAGGTATTAACCCGTTCTTGTTCTCACAGAGGCTACCAACTATGGCTTTGCCGTTGCTTCAGCTAGGGCAACAACCACCTTCTTCAATGGTTGAGAGTGTCAGTGCAGCCATTTCTTCGGATCCAAACTTCACTGCAGCCTTGGCAGCAGCGATTTCGTCAATCATTGGAGCGCAAAGAGGCGGTGATGATAATAATAACAATGCAAGTGTGGTTCCTACAGGTTCACCTCAGCTTCCTCAGTCATGCACTACATTCTCTACCAATTAG 1290 0.431 MENHHHNHREFSFLTSSGDFLHNNTDPPIKEMNLFSSSPNNNQQEDQDQPVNTGLNLTCASATKSKAENPKNSETELISTLQIELRKVQEENQKLRNVLEQITISYSQLQAQLSITLQKQNHVDNMEANHVMKSSEQKTMNDALVSVGKQGCPPDHAAKDVVECSSSHSSKTLEQDLTHFRKARVSIRARSEAPMISDGCQWRKYGQKMGKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAATAIANTTSAAAAMLLSNSSTSSTLSKESAPFLSAFPYATISTLSSTQPFPTITLDLTHGHNLAMQHSRIPLPLQHPQQQLLGINPFLFSQRLPTMALPLLQLGQQPPSSMVESVSAAISSDPNFTAALAAAISSIIGAQRGGDDNNNNASVVPTGSPQLPQSCTTFSTN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03626 429 MobiDBLite consensus disorder prediction 406 429 - -
Vifa5g03626 429 SUPERFAMILY WRKY DNA-binding domain 189 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g03626 429 Gene3D WRKY domain 181 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g03626 429 MobiDBLite consensus disorder prediction 16 54 - -
Vifa5g03626 429 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 64 409 IPR044810 GO:0003700
Vifa5g03626 429 SMART WRKY_cls 196 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03626 429 Coils Coil 71 112 - -
Vifa5g03626 429 Pfam WRKY DNA -binding domain 198 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03626 429 ProSiteProfiles WRKY domain profile. 191 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03626 429 FunFam probable WRKY transcription factor 31 181 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03626 Vifa-Chr5 1169132816 1169134817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03626 1 429 WRKY Transcription Factor Family AT4G01720 38.310 4.59e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g03626 WRKY 6.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03626 - - psat:127132551 670.233