Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03616 ATGTCACGTTACAGAGGGCCTCGTTTGAAAAAAATACGCCGTCTGGGGGCTTTACCAGGACTAACCAGTAAACAGCTTCCAGTTGGAAGCGAACAATCGCGCTCCAGTGAAAAAAGGGAAAAAAGGGAAAAAAGGGAAAAATCTTACTATTCTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTCCAGAACGCCAATTGCTGAAATATGTTCGTATCGCTGGAAAAGCGAAAGGGTCAACCGGTCAAGTTTTACTTCAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTGTGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAAATATACCAAGTTATCGTTGTAAACCTGAAGATATTATTACAGCCAAGGATGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTCAATCAGCCCCCCGCGAAAAATTGCCAACCCATTTGACTCTTGATCCATCCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTCAATGGGTTGGTTTGAAAATTAAGGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTAAAACCTAG 630 0.3778 MSRYRGPRLKKIRRLGALPGLTSKQLPVGSEQSRSSEKREKREKREKSYYSIRLEEKQKLRFHYGLPERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAVTIPQARQLVNHRHVLVNGRIVNIPSYRCKPEDIITAKDEQKSRTLIQNSLQSAPREKLPTHLTLDPSQYKGLVNQIIDSQWVGLKIKELLVVEYYSRQTKT 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03616 209 ProSiteProfiles S4 RNA-binding domain profile. 95 158 - -
Vifa5g03616 209 SMART Ribosomal_S4_2 3 94 IPR001912 GO:0019843
Vifa5g03616 209 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 205 - -
Vifa5g03616 209 SMART s4_6 95 159 IPR002942 GO:0003723
Vifa5g03616 209 MobiDBLite consensus disorder prediction 33 47 - -
Vifa5g03616 209 CDD S4 95 154 - -
Vifa5g03616 209 PANTHER 30S 40S RIBOSOMAL PROTEIN 37 177 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vifa5g03616 209 Pfam Ribosomal protein S4/S9 N-terminal domain 3 94 IPR001912 GO:0019843
Vifa5g03616 209 FunFam 30S ribosomal protein S4, chloroplastic 3 104 - -
Vifa5g03616 209 Pfam S4 domain 95 142 IPR002942 GO:0003723
Vifa5g03616 209 SUPERFAMILY Alpha-L RNA-binding motif 3 205 - -
Vifa5g03616 209 FunFam 30S ribosomal protein S4, chloroplastic 94 190 - -
Vifa5g03616 209 Gene3D - 94 190 IPR036986 GO:0003723
Vifa5g03616 209 NCBIfam 30S ribosomal protein S4 3 205 IPR005709 GO:0003735|GO:0006412|GO:0015935
Vifa5g03616 209 Hamap 30S ribosomal protein S4 [rpsD]. 1 205 IPR005709 GO:0003735|GO:0006412|GO:0015935
Vifa5g03616 209 ProSitePatterns Ribosomal protein S4 signature. 93 117 IPR018079 GO:0019843
Vifa5g03616 209 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03616 Vifa-Chr5 1168907754 1168908383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03616 91 139 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 44.898 5.17e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03616 K02986 - cave:30215214 323.553