Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa5g03604 | ATGAGTGCTACAGATGGTCTAAATAGAGGAATGGAAGTGATTGACACGGGAGTTGCTCTAAGTGTTCCAGTCGGTGGAGCAACCCTAGGTCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACACAATTATCCATTTTTGAAACAGGAATTAAAGTAGTCGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGTAAAACAGTTCTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCAGAATATTTCCGAGATGTCAATGAGCAGGACGTCCTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCCGGATCCGAAGTATCCGCCTTATTGGGCCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACTGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCAACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGCATCGTCGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAACGTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGGAAATATGTTGGTCTAGCAGAAACAATTCGAGGATTTAAATTGATTCTTTCTGGAGAATTAGATAGTCTTCCTGAACAAGCCTTTTATTTGGTGGGTAATATCGATGAAGCTACTGCGAAGGCTACGAACTTAACTTAG | 1242 | 0.4211 | MSATDGLNRGMEVIDTGVALSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGTLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKATNLT | 413 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03604 | 413 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 285 | 294 | IPR020003 | GO:0005524 | |
| Vifa5g03604 | 413 | CDD | F1-ATPase_beta_CD | 21 | 299 | - | - | |
| Vifa5g03604 | 413 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 74 | 294 | IPR000194 | GO:0005524 | |
| Vifa5g03604 | 413 | FunFam | ATP synthase subunit beta | 20 | 296 | - | - | |
| Vifa5g03604 | 413 | NCBIfam | F0F1 ATP synthase subunit beta | 1 | 412 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
| Vifa5g03604 | 413 | CDD | ATP-synt_F1_beta_C | 301 | 408 | - | - | |
| Vifa5g03604 | 413 | SUPERFAMILY | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 297 | 411 | - | - | |
| Vifa5g03604 | 413 | FunFam | ATP synthase subunit beta | 297 | 413 | - | - | |
| Vifa5g03604 | 413 | Gene3D | - | 20 | 296 | IPR027417 | - | |
| Vifa5g03604 | 413 | PANTHER | ATP SYNTHASE | 1 | 412 | - | - | |
| Vifa5g03604 | 413 | FunFam | ATP synthase subunit beta | 1 | 346 | - | - | |
| Vifa5g03604 | 413 | Gene3D | - | 297 | 413 | IPR024034 | - | |
| Vifa5g03604 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 21 | 299 | IPR027417 | - | |
| Vifa5g03604 | 413 | Hamap | ATP synthase subunit beta [atpB]. | 1 | 412 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
| Vifa5g03604 | 413 | SMART | AAA_5 | 86 | 278 | IPR003593 | GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa5g03604 | Vifa-Chr5 | 1168872186 | 1168873427 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03604 | 8 | 351 | Primary Pumps ATPases(2) | AT1G20260 | 27.273 | 2.53e-28 | 114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa5g03604 | K02112 | - | mnt:24286633 | 784.637 |