Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03600 ATGGAAAACGATCCCTTCCTCTTAATCAACCGTCAAAATTCACCTCTCACTTCTTCAAAATCCTTCAACGACTTCACCACCATACAACCACCACCGCAACACTCATCAGAAATTCAATCATGCAACTTCACTTCCCACCACCACCGACAACAACAACAACCGTCCTCTCCAAAACATAAAAAACTCAGCCGCTGCAAAACTGCACCTGCCATGTTCATTCTCTCAAACCTAAAACCACCACCCACCACCAACCAACCTCATCTCCCCAAACCTCAAACCAACTCCATCATCCGCCAAGGCATTTGGCTTCTCCTTATCTACCTCTCTATCGGCGTAGCCATCTACTCTTTCAACACAACCCATTTCTCCGGCATAGAAACTCACCCTATCGTCGACGCACTCTACTTCTGCATAGTCACCATGTGCACAATCGGTTACGGTGACATAGCTCCATTAACCCCAGTAACTAAACTCTTCGCATGCGTTTTCGTTTTAGTTGGTTTCGGTTTCATAGATATTCTCTTAAGCGGCCTTGTAAATTTCGTTTTAGATTTGCAAGAAAACACTATTTTAACCGGTCTTCAAATGGGTGCTAGGGAGGGTTTTTCAGCTAGGGATTACATTGTTGATGTTGCCAAAGGGAGGATGAGGATTAGGTTGAAGGTTGGTTTAGCACTTGGGGTTGTTGTTCTTTGTATTGGTGTTGGGAGTTTGGTTTTGTGTTTTGTTGAGGGTTTGGATTGGGTTGATTCCGTTTATTTGGCGGTTATGTCTGTTACCACCGTTGGGTATGGGGACCGCGCGTTTAAGACGCTTCCCGGGAGGTTGTTTGCGGCTATATGGTTGTTGTTTTCGACTTTGATGGTTGCTAGGGCTTTTTTGTATTTGGCTGAGGCTAGGATTGATAGAAGACATAGGAGATTGGCTAAGATGGTTTTGCATAGGGAAATTACTATTGAAGATTGGCTTGCTGCTGATATCAACAATACTGGTTTTATTAGTAAGTCAGAATATGTGATATTCAAGCTGAAAGAGATGGGAAAAATACAAGACAAAGATGTAATGCAAATTTGTGATCAATTCAGGAAGCTGGATCCCTCTAACTGTGGGAAGATAACATTACCTCATCTCTTGGAGGGAACATGA 1146 0.4319 MENDPFLLINRQNSPLTSSKSFNDFTTIQPPPQHSSEIQSCNFTSHHHRQQQQPSSPKHKKLSRCKTAPAMFILSNLKPPPTTNQPHLPKPQTNSIIRQGIWLLLIYLSIGVAIYSFNTTHFSGIETHPIVDALYFCIVTMCTIGYGDIAPLTPVTKLFACVFVLVGFGFIDILLSGLVNFVLDLQENTILTGLQMGAREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGVGSLVLCFVEGLDWVDSVYLAVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRLAKMVLHREITIEDWLAADINNTGFISKSEYVIFKLKEMGKIQDKDVMQICDQFRKLDPSNCGKITLPHLLEGT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03600 381 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 130 356 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa5g03600 381 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Vifa5g03600 381 PRINTS Two pore domain K+ channel signature 260 269 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa5g03600 381 PRINTS Two pore domain K+ channel signature 139 167 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa5g03600 381 MobiDBLite consensus disorder prediction 1 64 - -
Vifa5g03600 381 SUPERFAMILY Voltage-gated potassium channels 95 182 - -
Vifa5g03600 381 SUPERFAMILY EF-hand 322 377 IPR011992 -
Vifa5g03600 381 FunFam Two-pore potassium channel 3 205 319 - -
Vifa5g03600 381 Pfam Ion channel 103 182 IPR013099 -
Vifa5g03600 381 Pfam Ion channel 229 298 IPR013099 -
Vifa5g03600 381 Gene3D - 206 324 - -
Vifa5g03600 381 Gene3D - 87 193 - -
Vifa5g03600 381 SUPERFAMILY Voltage-gated potassium channels 212 320 - -
Vifa5g03600 381 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03600 Vifa-Chr5 1168756038 1168758429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03600 60 378 Ion Channels AT4G01840 69.018 5.71e-158 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03600 K05389 - gmx:100801488 566.614