Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03596 ATGGAGATTGAAAGAGTTTCTAGAGAAACCATCAAACCTTCATCACCAACTCCATCTCACCTTAGAATATATCCACTTTCTTTTATAGACAACATTTTTGTTTGTAATGTTCCAATACTCTTCTTTTACAACCCAAACAAGAGTTGTGACCAAAATTCAAAAATATCACAACTCAAAATATCATTATCTCATGTTTTATCCAAATACTATATTTTTGCCGGCAGGTTGAAAAATAGAATTACTATTGAATGTGACGACCAAGGTGTGTCGTTTTTGGTTACAAAGATAAAAAATAAACTATCAGATATCCTTAAACACCCCGAAGAAAAATTGTTGAACTCTTTGTTTGCTGACGGGTTGCAATGGAAAGACGTAGATCCGAGTGTCGCTTTAGTAGCCATTCAAATTAATTGTTTTGAATGTGGAGGAATAGCTATAAGTATCTGCATGAATCACAAATGTGGCGATGCTTCCACCCTTATCAATTTAATGAATGAATGGGCAATTATCAATAAAAAATTAGAAGAAGAAAATGAAGAAGAGTTATTAATATTGCCCTTTCCTTTACATGAGGGAGGAGGTTCAATTTTTCCTCAAAAAAACTTACCAATTTTCCCAGAATCGGTTCACAATAGACAAAAGAATATAGCGTGTAAAAGATTTGTATTTCAACCGTCAATAATTAAGTTTCTCAAGGAGTTGGCAAGTTCTAGTTCTATACGTTATTCCTCACGAGTCCTAGTTGTAAAAGCTTGGATTTACAAGCATGCAATTTCATCAATGGGAATAAATTTCAAGACATCATCCTTTCAAATGGTTGTAGACCTTCGCAAAAGAATGATTCCTCCATTGTCTGAAAAATGTGTGGGAAATATAGTTTGGATATCAACTATGTTCGCTGATAAAGAGGAAATGGAGTTGAAAGATGTAGTATACAAAATAAAAGAAGGATTGTCTGAATTTTGTGACGTTTATCCAAAATTATTTGGAGGGAATAATTTTTTGTTGTTATATGAGTTCATGAATAAAGTTATTAATCTTAAATCTAAGAAAAAAGATGGGATTGGTTTTAGTAGTTGGTGTAATTTTCCAACATATGAAGTAGATTTTGGATGGGGAAAACCAACATGGGTTACTACTTGTGGTTGTCCTTGGAAGAATTTCGTAATTCTGATGGATAGAAAAGATGGGAACGGGATTGATGCGATTGTGAACTTGGAAGAGAATCATATGACTGAGTTTGAGCAGGAATATGTGAAGCTTCTTCAATAG 1272 0.3341 MEIERVSRETIKPSSPTPSHLRIYPLSFIDNIFVCNVPILFFYNPNKSCDQNSKISQLKISLSHVLSKYYIFAGRLKNRITIECDDQGVSFLVTKIKNKLSDILKHPEEKLLNSLFADGLQWKDVDPSVALVAIQINCFECGGIAISICMNHKCGDASTLINLMNEWAIINKKLEEENEEELLILPFPLHEGGGSIFPQKNLPIFPESVHNRQKNIACKRFVFQPSIIKFLKELASSSSIRYSSRVLVVKAWIYKHAISSMGINFKTSSFQMVVDLRKRMIPPLSEKCVGNIVWISTMFADKEEMELKDVVYKIKEGLSEFCDVYPKLFGGNNFLLLYEFMNKVINLKSKKKDGIGFSSWCNFPTYEVDFGWGKPTWVTTCGCPWKNFVILMDRKDGNGIDAIVNLEENHMTEFEQEYVKLLQ 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03596 423 Gene3D - 213 423 IPR023213 -
Vifa5g03596 423 PANTHER F21J9.9 5 417 - -
Vifa5g03596 423 Coils Coil 404 423 - -
Vifa5g03596 423 Pfam Transferase family 1 418 - -
Vifa5g03596 423 Gene3D - 1 202 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03596 Vifa-Chr5 1168272364 1168273635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03596 1 416 Monolignol Biosynthesis Gene Families AT5G48930 22.444 3.53e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03596 - - gmx:100806928 407.142