Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03595 ATGGCTGTAGACCTTCGCAAAAGAATGATTCCTCCATTGTCTGAAAAATGTGTGGGAAATATAGTTTGGATGTCAACTATGTTCGCTGATAAGGAGGAAATGGAGTTGAAAGATGTAGTATGCAAAATAAAAGAAGGATTGTCTGAATTTTGTGACGTTTATCCAAAATTATTTGGAGGGAATAATTTTTTGTTGTTATCTGAGTTCATGAATAAAGTTATTAATCTTAAATCTAAGAAAAAAGATGGGATTGGTTTTAGTAGTTGGTGTAATTTTCCAATATATGAAGTAGATTTTGGATGGGGAAAACCAACATGGATTACTACTTGTGGTTGTCCTTGGAAGAATTTCGTAATTCTAATGGATAGAAAAGATGGAAACGGGATTGATGCGATTGTGAGTTTGGAAGAGAATCATATGACTAAATTTGAGCAGGAATATGTGAAGCTTCTTCAATAG 459 0.3333 MAVDLRKRMIPPLSEKCVGNIVWMSTMFADKEEMELKDVVCKIKEGLSEFCDVYPKLFGGNNFLLLSEFMNKVINLKSKKKDGIGFSSWCNFPIYEVDFGWGKPTWITTCGCPWKNFVILMDRKDGNGIDAIVSLEENHMTKFEQEYVKLLQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03595 152 Gene3D - 1 152 IPR023213 -
Vifa5g03595 152 Pfam Transferase family 1 147 - -
Vifa5g03595 152 PANTHER F21J9.9 2 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03595 Vifa-Chr5 1167784621 1167785079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03595 1 145 Monolignol Biosynthesis Gene Families AT5G48930 27.152 3.98e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03595 - - lja:Lj3g3v0730040.2 167.162