Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03594 ATGGAGGGAAAGGTAGCTATCTCAGTTGTTTCTCTTATCCTCGTCATAGGTGTTGCCATCGGCGTTGTTGTCGTTGTTCACAAATCTGGTGATCCTCAGATCCAAGCTCAACAAAAAAATGTTGAAATTATGTGTCAAAGTGCAGAAGATAAAAATCTTTGCCATGACACTCTTAAATCCGTTAATGGCTTAGACTCCGCAGATCCAAAGGCATACATAGCAGCCGCCGTGAAAGCCACCACTGACAGTGTCATCAAGGCTTTCAACATGAGTGACAGACTCACCACCCAGTACGGTAGCAAAGATAATGGCATCAAGATGGCCCTTGATGACTGCAAAGATTTGTTGGAGTTTGCCATGGACAGTCTCGAAATGTCCACCAATTTGCTACGTGACAGCAACATTCAAGGTGTGCATTCCCAATCTCCTGATATCAGGAATTGGTTGAGTGCAGTTATCTCTTACCAACAAAGTTGCATGGAAGGATTTGACGATGCAAAAGATGGTGAGAAAAAGATCAAGCAACAATTTCAAATAGAGTCTTTGGACAGCGTACAAAAGGTCACCGGTGTTGCACTTGATATCATGAGTGCTTTGTCCAACATCCTTGAACAATTCAACTTGAAGTTTGATCTTAAACCTGCTTCTCGTCGTCTTCTTGCTGAGGATATCGATGACGAAGGATTCCCTTCATGGTTCTCGGGATCTGATCGTAAGCTTTTGGCTGGCATGCGAGGAAAGGGATGGAGATCAAAAGTAACCCCTAATGCTATTGTTGCCAAGGATGGTAGCGGCCAATTTAAAACCATTAAGGATGCTATTGCCTCTTACCCTAGCGGAAACAAAGGAAGATATGTTATCTACGTTAAGGCCGGTGTTTATGACGAGTACATCACCATCCCCAAGAGTGCTGCTAACATTCTTATGTATGGTGATGGCCCTCTAAGAACCATTGTCACCGGTAAAAAGTGTTTTGCTAATGGTGTCAAGACCATGCAAACCGCCACCTTCGCCAACACCGCACCTGGATTCATCGCAAAGGCAATGAAATTCGAGAACACAGCCGGTCCTGACGGTCACCAAGCCGTAGCTTTGAGAAACCAAGGAGATATGTCTGCCTTCGTCGGTTGCCACATCATTGGTTATCAAGACACATTGTACGTTCAAACCAACAGACAATTCTACCGCAACTGTGTTATCTCAGGAACAATCGATTTCATCTTCGGAACATCACCTACCTTGATTCAAAAATCCGTGATCATCGTCAGGAAGCCTAACATGAATCAATTCAACACAGTTACCGCAGACGGAACAGTCGAGAAGAACATGATTACAGGTATTGTGATCCAAGATTGCCAGATCGTTCCAGAAGCACAATTGTTTCCAGTGAGATTCCAAATCAAATCTTACTTGGGAAGACCATGGAAGGCTCACTCAACGACAGTTGTGATGGAATCCACCATTGGTGACTTCCTTCATCCAGATGGTTGGGTCCTATGGTCAGGTGAAACCTTTGAAAACACATGTTACTATGCTGAATATGCCAACACTGGACCTGGTGCCGATGTTAGCAAGAGGATCAAGTGGAAGGGTTATCATGGTGTCATTAGCAAAGCTGAAGCTACACAATTCACAGCTGCTCAGTTCCTTAGGGCTGGACCTAATTCTAGACCTGAATGGTTGACGTTTATGAATGGACTTCGTATTCCTCACTATCTTGGCTTCAAAGCTTGA 1734 0.4418 MEGKVAISVVSLILVIGVAIGVVVVVHKSGDPQIQAQQKNVEIMCQSAEDKNLCHDTLKSVNGLDSADPKAYIAAAVKATTDSVIKAFNMSDRLTTQYGSKDNGIKMALDDCKDLLEFAMDSLEMSTNLLRDSNIQGVHSQSPDIRNWLSAVISYQQSCMEGFDDAKDGEKKIKQQFQIESLDSVQKVTGVALDIMSALSNILEQFNLKFDLKPASRRLLAEDIDDEGFPSWFSGSDRKLLAGMRGKGWRSKVTPNAIVAKDGSGQFKTIKDAIASYPSGNKGRYVIYVKAGVYDEYITIPKSAANILMYGDGPLRTIVTGKKCFANGVKTMQTATFANTAPGFIAKAMKFENTAGPDGHQAVALRNQGDMSAFVGCHIIGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQKSVIIVRKPNMNQFNTVTADGTVEKNMITGIVIQDCQIVPEAQLFPVRFQIKSYLGRPWKAHSTTVVMESTIGDFLHPDGWVLWSGETFENTCYYAEYANTGPGADVSKRIKWKGYHGVISKAEATQFTAAQFLRAGPNSRPEWLTFMNGLRIPHYLGFKA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03594 577 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Vifa5g03594 577 SUPERFAMILY Pectin lyase-like 253 552 IPR011050 -
Vifa5g03594 577 Gene3D - 250 566 IPR012334 -
Vifa5g03594 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 201 IPR035513 -
Vifa5g03594 577 PANTHER PECTINESTERASE 18 562 - -
Vifa5g03594 577 Pfam Pectinesterase 256 551 IPR000070 GO:0030599|GO:0042545
Vifa5g03594 577 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Vifa5g03594 577 FunFam Pectinesterase 250 567 - -
Vifa5g03594 577 Pfam Plant invertase/pectin methylesterase inhibitor 41 195 IPR006501 GO:0004857
Vifa5g03594 577 CDD PMEI-like_3 44 201 - -
Vifa5g03594 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Vifa5g03594 577 FunFam Pectinesterase 37 200 - -
Vifa5g03594 577 SMART PMEI_2 36 195 IPR006501 GO:0004857
Vifa5g03594 577 NCBIfam pectinesterase inhibitor domain 18 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03594 Vifa-Chr5 1167711892 1167713707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03594 1 554 Carbohydrate Esterase AT2G47030 41.596 7.27e-144 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03594 K01051 - gmx:100781507 822.387