Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03592 ATGAACGGAAAGGTAATTATCTCAGTTGTTTCTCTTATCCTCGTTGTAGGTGTTGCCATCGGCGTTGTTGTCACTGTTCACAAGAATGGTGAAGATCCTGAGATCCAAGTCCAACAAAGATCTGTTCAAATTGTTTGCCAAAATGCAGAAGATAAAAAGCTTTGCCATGACACTCTTAAATCCGTTAGTGGCATCGATTGTGCAGATCCAAAGGCATACATAGCAGCCGCCGTGAAAGCCACAACTGACAGTGTCATTAAGGCCTTCAACATGAGTGACAGACTCACCACCGAGTACGGTAGCAAAGATAATGGCATCAAGATGGCTCTTGATGACTGCAAAGATTTGTTGGAGTTTGCCATGGACAGTCTCGAAATGTCCACCAATTTGGTTCGTGACAACAACATTCAAGGTGTGCATTCCCAATCTCCTGATATCAGGAATTGGTTGAGTGCAGTTATCTCTTACCAACAAAGTTGCATGGAAGGATTTGACGATGCAAAAGATGGTGAGAAAAAGATCAAGCAACAATTTCAAATAGAGTCTTTGGACCGCATACAAAAGATCACCGGTGTTGCACTTGATATCGTGAGTGGTTTGTCCAACATCCTTGAACAATTCAGCATGAAGCTTGATCTTAAACCTGCTTCTCGTCGTCTTCTTGCTGAGGATATCGATGAAGAAGGATTCCCTTCATGGTTCTCTGGTTCTGATCGCAAGCTTTTGGCTGGCATGCGAGGAAAGGGATGGAGATCACGTGTTGTGCCTAATGTTGTTGTTGCCAAGGATGGTAGCGGCCAATTTAAAACCATTAAGGATGCTATTGCCTCTTACCCTAGCGGAAACAAGGGGAGATATGTTATCTACGTTAAGGCCGGTGTTTATGACGAGTACATCACCGTCCCCAAGAATGCTGCTAACATTTTTATGTATGGTGATGGCCCTCAAAGAACCATTGTCACCGGTAAAAAGTGCTTTGCTAATGGTGTCAAGACCATGCAAACCGCCACCTTCGCCAACACCGCACCTGGATTCATCGCAAAGGCAATGACATTCGAGAACACAGCCGGTCCTGACGGTCACCAAGCCGTAGCTTTGAGAAACCAAGGAGATATGTCTGCTTTCATCGGTTGCCATATCCTTGGTTATCAAGACACATTGTACGTTCAAACCAACAGACAATTCTACCGCAACTGTGTTATCTCAGGAACAATCGATTTCATCTTCGGAACATCACCTACCTTGATTCAAAAATCCGTGATCATCGCCAGGAAGCCTAACATGAATCAATTCAACACAGTTACCGCAGACGGAACATCCGAGAAGAACATGGCCACAGGTATTGTGATCCAAGATTGCCTGATCGTCCCAGAAGCAGAATTGTTTCCAGTGAGATTCCAAATCAAATCATACTTGGGAAGACCATGGAAGGCATACTCAAAGACAGTTGTGATGGAATCCACCATTGGTGACTTCCTTCATCCAGATGGTTGGGTCACATGGACAGGTGAAACCTTTGAAAACACATGTTACTATGCTGAATATGCCAACACTGGACCAGGTGCCGATGTTAGCAAGAGGATCAAGTGGAAGGGTTATCATAGTAACATTAGCAAGGCTGAAGCTACACAATTCACTGCTGCTCAATTTCTTAAGGCTGGACCTAAGTCTGGAGCTGAATGGTTGCACGCTCTTCGTGTTCCTCACTATCTTGGCTTCAAAGCTTGA 1728 0.445 MNGKVIISVVSLILVVGVAIGVVVTVHKNGEDPEIQVQQRSVQIVCQNAEDKKLCHDTLKSVSGIDCADPKAYIAAAVKATTDSVIKAFNMSDRLTTEYGSKDNGIKMALDDCKDLLEFAMDSLEMSTNLVRDNNIQGVHSQSPDIRNWLSAVISYQQSCMEGFDDAKDGEKKIKQQFQIESLDRIQKITGVALDIVSGLSNILEQFSMKLDLKPASRRLLAEDIDEEGFPSWFSGSDRKLLAGMRGKGWRSRVVPNVVVAKDGSGQFKTIKDAIASYPSGNKGRYVIYVKAGVYDEYITVPKNAANIFMYGDGPQRTIVTGKKCFANGVKTMQTATFANTAPGFIAKAMTFENTAGPDGHQAVALRNQGDMSAFIGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQKSVIIARKPNMNQFNTVTADGTSEKNMATGIVIQDCLIVPEAELFPVRFQIKSYLGRPWKAYSKTVVMESTIGDFLHPDGWVTWTGETFENTCYYAEYANTGPGADVSKRIKWKGYHSNISKAEATQFTAAQFLKAGPKSGAEWLHALRVPHYLGFKA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03592 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vifa5g03592 575 FunFam Pectinesterase 251 573 - -
Vifa5g03592 575 PANTHER PECTINESTERASE 13 563 - -
Vifa5g03592 575 NCBIfam pectinesterase inhibitor domain 10 176 IPR006501 GO:0004857
Vifa5g03592 575 Gene3D - 251 573 IPR012334 -
Vifa5g03592 575 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Vifa5g03592 575 CDD PMEI-like_3 45 202 - -
Vifa5g03592 575 FunFam Pectinesterase 38 201 - -
Vifa5g03592 575 Pfam Pectinesterase 257 552 IPR000070 GO:0030599|GO:0042545
Vifa5g03592 575 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Vifa5g03592 575 SUPERFAMILY Pectin lyase-like 256 552 IPR011050 -
Vifa5g03592 575 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Vifa5g03592 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 200 IPR035513 -
Vifa5g03592 575 SMART PMEI_2 37 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03592 Vifa-Chr5 1167343771 1167345582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03592 1 573 Carbohydrate Esterase AT2G47030 41.109 9.41e-144 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03592 K01051 - gmx:100781507 860.136