Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03582 ATGGCTTCAGGTGGTGTTGCACCTGTTTGTGGTTTTATAGATAAGAATGCAAGTTTGGCTGGTGTTGAAAAGTTACCTGAGGAAATGAATGACATGAAAATTAGAGATGATAAGGAAATGGAAGCTGCTACTGTGGTTGTAGATGGAAATGGGACTGAAACTGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACGATAAGTTACATGGCCGAGCGCGTAGTTGGACATGGATCTTTCGGTGTAGTTTTTCAGGCGAAGTGTTTGGAGACCGGAGAAACTGTGGCTATAAAGAAGGTTCTTCAGGACAAGAGGTACAAGAACCGGGAACTGCAAACCATGCGCCTTTTGGATCACCCGAATGTTGTATCTTTGAAGCATTGTTTCTTCTCGACGACTGAAAAGGATGAGCTTTATCTTAACTTGGTGCTTGAGTACGTTCCTGAGACGGTTAGTCGTGTGATCAGACACTACAATAAAATGAATCAAAGAATGCCTATGATATATGTCAAACTTTATTCTTACCAGATTTGCAGAGCGCTTGCTTATATTCACAATAGTATTGGAGTATGTCACAGAGATATTAAACCTCAAAATTTACTGGTCAATCCTCACACGCACCAACTGAAGATATGTGATTTCGGAAGTGCTAAAGTTTTGGTTAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGCGCAACCGAATACACCACAGCGATTGATATTTGGTCAGCTGGTTGCGTACTCGGTGAACTTTTGCTTGGTCAGCCGCTTTTTCCTGGTGAGAGTGGTGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGTACTCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTATACAGAGTTTAAATTTCCTCAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAACGAATGCCACCTGAAGCCGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTTCGAAGCACTGCTTTGGAGGCACTGGTTCATCCATTCTTTGACGAGCTGCGCGATCCAAACACTCGGTTGCCGAACGGACGCTTCCTTCCCCTGTTATTCAACTTCAAAGTCACTGAGCTCAAGGGAGTTCCGGCCGAGATGCTGGTGAAGCTGGTTCCCCCTCATGCAAGAAAGCAATGTGCCTTGTTTGGATCATCATCATGA 1242 0.4283 MASGGVAPVCGFIDKNASLAGVEKLPEEMNDMKIRDDKEMEAATVVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVSRVIRHYNKMNQRMPMIYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPLLFNFKVTELKGVPAEMLVKLVPPHARKQCALFGSSS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03582 413 CDD STKc_GSK3 70 362 IPR039192 -
Vifa5g03582 413 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524
Vifa5g03582 413 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 39 405 - -
Vifa5g03582 413 SUPERFAMILY Protein kinase-like (PK-like) 74 386 IPR011009 -
Vifa5g03582 413 Gene3D Phosphorylase Kinase; domain 1 59 154 - -
Vifa5g03582 413 FunFam Glycogen synthase kinase-3 beta 59 154 - -
Vifa5g03582 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vifa5g03582 413 Pfam Protein kinase domain 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03582 413 ProSiteProfiles Protein kinase domain profile. 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03582 413 Gene3D Transferase(Phosphotransferase) domain 1 155 403 - -
Vifa5g03582 413 FunFam Shaggy-related protein kinase kappa 155 403 - -
Vifa5g03582 413 SMART serkin_6 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03582 Vifa-Chr5 1164136048 1164138592 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03582 81 367 Core Cell Cycle Gene Families AT1G76540 34.576 4.80e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa5g03582 Pkinase 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03582 K00924 - rcu:8265911 764.607