Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03580 ATGGATGTTGAACGGTCAAAAAGTAGAAAAAGAGATAAGACTAGATTTTATGGAAAAGGAAAAAAAACAAAAGTAAGACATAGATATCCAATCCAACCTCTTCTCTGGGTTGAAGTTGAAGTGTTGATGTTCACTTTTGAAGATAAGAATGCAAGTTTGGCTGGTGTTGAAAAGTTACCCGAGGAAATGAATGACATGAAAATTAGAGATGATAAGGAAATGGAAGCTGCTACTGTGGTTGTAGATGGAAATGGGACTGAAACTGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACGATAAGTTACATGGCCGAGCGCGTAGTTGGACATGGATCTTTCGGTGTAGTTTTTCAGGCGAAGTGTTTGGAGACCGGAGAAACTGTGGCTATAAAGAAGGTTCTTCAGGACAAGAGGTACAAGAACCGGGAACTGCAAACCATGCGCCTTTTGGATCACCCGAATGTTGTATCTCTGAAGCATTGTTTCTTCTCGACGACTGAAAAGGATGAGCTTTATCTTAACTTGGTGCTTGAGTATGTTCCTGAGACGGTTAGTCGTGTGATCAGACACTACAATAAAATGAATCAAAGAATGCCTATGATATATGTCAAACTTTATTCTTACCAGATTTGCAGAGCGCTTGCTTATATTCACAATAGTATTGGAGTATGTCACAGAGATATTAAACCTCAAAATTTACTGGTCAATCCTCACACGCACCAACTGAAGATATGTGATTTCGGAAGTGCTAAAGTTTTGGTTAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGCGCAACCGAATACACCACAGCGATTGATATTTGGTCAGCTGGTTGCGTACTCGGTGAACTTTTGCTTGGTCAGCCGCTTTTTCCTGGTGAGAGTGGTGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGTACTCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTATACAGAGTTTAAATTTCCTCAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAGCGAATGCCACCTGAAGCCGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTTCGAAGCACTGCTTTGGAGGCACTGGTTCATCCATTCTTTGACGAGCTGCGCGATCCAAACACTCGGTTGCCGAACGGACGCTTCCTTCCCCCGTTATTCAACTTCAAAGTCACTGAGCTCAAGGGAGTTCCGGCCGAGATGCTGGTGAAGCTGGTTCCCCCTCATGCAAGAAAGCAATGTGCCTTGTTTGGATCATCATCATGA 1344 0.4196 MDVERSKSRKRDKTRFYGKGKKTKVRHRYPIQPLLWVEVEVLMFTFEDKNASLAGVEKLPEEMNDMKIRDDKEMEAATVVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVSRVIRHYNKMNQRMPMIYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKVTELKGVPAEMLVKLVPPHARKQCALFGSSS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03580 447 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03580 447 ProSitePatterns Protein kinases ATP-binding region signature. 115 139 IPR017441 GO:0005524
Vifa5g03580 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vifa5g03580 447 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03580 447 Gene3D Phosphorylase Kinase; domain 1 93 188 - -
Vifa5g03580 447 FunFam Shaggy-related protein kinase kappa 189 437 - -
Vifa5g03580 447 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03580 447 CDD STKc_GSK3 104 396 IPR039192 -
Vifa5g03580 447 SUPERFAMILY Protein kinase-like (PK-like) 108 421 IPR011009 -
Vifa5g03580 447 FunFam Glycogen synthase kinase-3 beta 93 188 - -
Vifa5g03580 447 Gene3D Transferase(Phosphotransferase) domain 1 189 437 - -
Vifa5g03580 447 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 73 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03580 Vifa-Chr5 1164093865 1164096815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03580 115 396 Core Cell Cycle Gene Families AT1G76540 35.172 1.55e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa5g03580 Pkinase 2.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03580 K00924 - zju:107426218 761.14