Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03560 ATGCTGGAGATTCAGAACGAACCACCACCGGATCAAACCGTGAATTTCATCGGAGATTCAACTAACTCTCAATTTCATCTTAACACTTTCCCCAATCACGCAACCGCTCCGAATCCGAATCCTAACTTCTCCGTCCCTCGTCCGCCTCCTCCGCGCAAACGACCGTGGGTAGCTTCTCCAGATCAAGTTGATATTCATGGTCATGCTAAAGTTTACGTTGCACCAGTTCCTAGAACGTTATCTGAGGATGATATCCGACTTGTGTTTGAAGTATATGGAACTATTGTCGAGGTTGTTCTTTTAACGGATAAGGCAACTGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTTAATGAAGCTGAAATGGCTATTAAGGCTTTAAGCAATCAGTATATATTTCCTGGAGAAGCATATCCTGTTGTTGTCAGATTTGCTGATCGTGCACGTGAACGTTTTGGGCTTCGAGGGGGCTTCTGTCGAAACATGGAAAAGAAAGACCCTCCGGAAGTGGTGGATAAAATTTTTGTTAGTTACATACACAAAGATGCTTCAAGTCAGGACATTGAAGAAATATTTTCCCCCTACGGGCATATAGAAGATGTCTATATCGTGCGGAATCGTGGATATGGTTTTGTCAAATTTTCTAATAGAGAGATGGCGTTGGCAGCAATCAAAGGGTTAAATAGAACATTCACGATGAGAGGTTGTGATCAACCATTATCTGTTCGTTTTGCGCAACCTAAGAAACCTAAGATGGGAGAATCAAGGGGCAACTACTTACCTGCGAATGCAAATTTCGGTCCCACTTCTCAAGAACCAGCAGTTTGGCCACTACCAAATTTTTGTGATTCTAATACTGGAGGGAGTTTTGCGCATATTGCTCCACATCATTCCAGACTTCCACACCAACAAGTTAACGCTCATATGCCAAACTGGGAACCTGGGGCTACTGTTGTACAGCAACAATTTCTTCCCCAACATGTACATTCTCAATTGGCTTCAATGCCTTTGCGGCCAATTCAACCTCCCAACCTGCCTTCTCAACCATTTATTACCGAGGTGCAGAGACAATTTCATCCAGCAGATTTCCCCGTCCAAAATATAGAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAGCATAACAGTTTAGGTACTGTCAGCACATCGCCCGATCTTTCTACTAATCCCGAAGATGAAGAGTTTCCAGAGTGTGACTGGAGTGAACATTACTGCCCAGATGGTAACAAGTACTACTACAATTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCAGAAGAATATGACCAGGAATCACAGAAGCAACGCAAGCAAGATGATCACAGCATTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAACATTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAACATTCCTTGCCCGCAGGAATCACAGAAGCAACACAAGCAAGATGATCACAGCATTCCTTTCCCGCAGGAATCACAGGAGCAACACAAGCAAGATGATCACAGCATTCCTTGCCCGCGGGAATCACAGAAGCAACACAAGCAAGATGATGACAGCATTCCTTGCCTGCAGTTGTCGTTATCTTCCCCTCAAAAAGTTTCTCAAAGGCAACAGGAATCAAATCACGATTACATGCAGTCAGAAACAAATCCTGTTGTTGAACAGGTGTGA 1728 0.4427 MLEIQNEPPPDQTVNFIGDSTNSQFHLNTFPNHATAPNPNPNFSVPRPPPPRKRPWVASPDQVDIHGHAKVYVAPVPRTLSEDDIRLVFEVYGTIVEVVLLTDKATGARQGSCLVKYSTFNEAEMAIKALSNQYIFPGEAYPVVVRFADRARERFGLRGGFCRNMEKKDPPEVVDKIFVSYIHKDASSQDIEEIFSPYGHIEDVYIVRNRGYGFVKFSNREMALAAIKGLNRTFTMRGCDQPLSVRFAQPKKPKMGESRGNYLPANANFGPTSQEPAVWPLPNFCDSNTGGSFAHIAPHHSRLPHQQVNAHMPNWEPGATVVQQQFLPQHVHSQLASMPLRPIQPPNLPSQPFITEVQRQFHPADFPVQNIEQQLSSQLPTQTEHNSLGTVSTSPDLSTNPEDEEFPECDWSEHYCPDGNKYYYNCVTCESRWEKPEEYDQESQKQRKQDDHSIPCPQESQKQHKQDDHNIPCPQESQKQHKQDDHNIPCPQESQKQHKQDDHSIPFPQESQEQHKQDDHSIPCPRESQKQHKQDDDSIPCLQLSLSSPQKVSQRQQESNHDYMQSETNPVVEQV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03560 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 250 IPR000504 GO:0003723
Vifa5g03560 575 MobiDBLite consensus disorder prediction 440 575 - -
Vifa5g03560 575 MobiDBLite consensus disorder prediction 538 575 - -
Vifa5g03560 575 SUPERFAMILY RNA-binding domain, RBD 175 261 IPR035979 GO:0003676
Vifa5g03560 575 Gene3D - 62 155 IPR012677 -
Vifa5g03560 575 Gene3D - 163 257 IPR012677 -
Vifa5g03560 575 SMART rrm1_1 176 246 IPR000504 GO:0003723
Vifa5g03560 575 SMART rrm1_1 70 146 IPR000504 GO:0003723
Vifa5g03560 575 MobiDBLite consensus disorder prediction 41 55 - -
Vifa5g03560 575 ProSitePatterns WW/rsp5/WWP domain signature. 411 436 IPR001202 GO:0005515
Vifa5g03560 575 Gene3D - 393 455 - -
Vifa5g03560 575 CDD WW 409 438 IPR001202 GO:0005515
Vifa5g03560 575 MobiDBLite consensus disorder prediction 8 40 - -
Vifa5g03560 575 MobiDBLite consensus disorder prediction 378 410 - -
Vifa5g03560 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 235 IPR000504 GO:0003723
Vifa5g03560 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 135 IPR000504 GO:0003723
Vifa5g03560 575 Pfam WW domain 409 436 IPR001202 GO:0005515
Vifa5g03560 575 SUPERFAMILY RNA-binding domain, RBD 38 158 IPR035979 GO:0003676
Vifa5g03560 575 SMART ww_5 406 438 IPR001202 GO:0005515
Vifa5g03560 575 MobiDBLite consensus disorder prediction 378 400 - -
Vifa5g03560 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 150 IPR000504 GO:0003723
Vifa5g03560 575 MobiDBLite consensus disorder prediction 440 537 - -
Vifa5g03560 575 PANTHER RNA BINDING PROTEIN 23 466 - -
Vifa5g03560 575 MobiDBLite consensus disorder prediction 1 55 - -
Vifa5g03560 575 SUPERFAMILY WW domain 410 440 IPR036020 GO:0005515
Vifa5g03560 575 ProSiteProfiles WW/rsp5/WWP domain profile. 411 438 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03560 Vifa-Chr5 1160035893 1160042512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03560 71 364 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 3.68e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03560 K13207 - gmx:100776162 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03560 5 1160035893 1160042512 Vifa5g03560 5 1160035893 1160042512 ECH