Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03559 ATGGAGAAAAAGAGTATGAATATAAATATGGATGATTATTCGACTGGATCTTTTCCTACATATTCGCTTACAAACATGTTTGATTTATCTGAAGAAAGGAGTTTCATGGAGCTATTAGGTGTGCAGAACATGAATAACAGTTACAGTTTTCTTGATTTTCCTGTTGATGTAAAGGAATCGATCACTGAGAATGGTGGAAATGGGAAAGAATCGTCTTTGAATAGTCAACAACAACAACCTGTTACTCCTAACTCTTCTTCTATTTCTTCTGCCTCTAGTGAAGCACTCAATGATGAACACAATAAAACTGTTGACCAAGCCGATCATCATCTCCAAAAACAGTTGAAAGCTAAGAAGACAACGAATCAGAAGAGACAGAGAGAAGCTAGAATCGCGTTCATGACGAAAAGCGAGGTGGATCATTTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTTAAAAACAGCCCATTTCCGAGGAGCTATTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACACGTGGAGAGGTCATTGAGTGATCCAACCATTGTAGTAACAACCTACGAAGGGAAACACACACATCCAAATCCAGTTATGGGTCGTTCTTCAGCTTCTCATGTTGGATCTTTAGTATCACCACTAGCAGCTGAATGCACCACCACAAACTTTGGTGGTTCTGAAAACTACATGATGCCGTCTCAATATTATAATCACCACCGTCAACAGGTTCTCTTCAATACTTTGTCGTCTATGGGTTTTCCTTCAAAGATTCCTCAAGAGAGATTGGTTTGTAGTAATCCAAGGGTTATGGATCATGGTCTTCTTCAAGATGTTGTCCCTTCAAATATGTTTAAGGAGGAGTAG 879 0.3936 MEKKSMNINMDDYSTGSFPTYSLTNMFDLSEERSFMELLGVQNMNNSYSFLDFPVDVKESITENGGNGKESSLNSQQQQPVTPNSSSISSASSEALNDEHNKTVDQADHHLQKQLKAKKTTNQKRQREARIAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLSDPTIVVTTYEGKHTHPNPVMGRSSASHVGSLVSPLAAECTTTNFGGSENYMMPSQYYNHHRQQVLFNTLSSMGFPSKIPQERLVCSNPRVMDHGLLQDVVPSNMFKEE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03559 292 ProSiteProfiles WRKY domain profile. 137 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03559 292 SMART WRKY_cls 142 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03559 292 PIRSF WRKY_txn_fact_IIc 1 292 IPR017396 GO:0003700
Vifa5g03559 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 233 IPR044810 GO:0003700
Vifa5g03559 292 Gene3D WRKY domain 125 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g03559 292 MobiDBLite consensus disorder prediction 61 130 - -
Vifa5g03559 292 MobiDBLite consensus disorder prediction 64 97 - -
Vifa5g03559 292 MobiDBLite consensus disorder prediction 98 130 - -
Vifa5g03559 292 FunFam WRKY transcription factor 57 128 202 - -
Vifa5g03559 292 Pfam WRKY DNA -binding domain 143 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03559 292 SUPERFAMILY WRKY DNA-binding domain 134 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03559 Vifa-Chr5 1160031870 1160033062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03559 80 292 WRKY Transcription Factor Family AT2G47260 51.004 1.25e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g03559 WRKY 2.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03559 - - gmx:100816452 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03559 5 1160031870 1160033062 Vifa5g03559 5 1160031870 1160033062 ECH
Vifa5g03559 5 1160031870 1160033062 Vifa3g02119 3 526212462 526214669 PCT