Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03555 ATGGCATCATTTGCAGGCACTACACAGAAATGTAAAGTATGTGAAAAGAAAGTCTACTGGATGGAACAAATTACTGCTGACCATAGAGTGTACCATAGATCTTGTTTCAGATGCCACCATTGCAAGGGTAACCTCAAGTTGAGTAACTATTGTTACTTTGAGGGTGATGTTTATTGTAAGCCTCATTTTGATCAACTATTTAAGATGACAGGCTATTTGGACAAAAGTTTTGAAGGTATTGCAAGAATTTATAGAGCTGAAAGATTTGGTGATCAGGTTCAAGCCAATAACAAGGTTTCAAGATATTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGTAACAAAACAGTGTACCCAATTGAAAAGGTGAATGTTGATGGGAAATCATACCATAAGAGTTGCTTCAGGTGCACACATGGAGGTTGTTTGATGAGTCTATCAAATTATGTGACTCATGAGAATCTTTTTTATTGTAAACACCATCATACTCAGCTATTCAAACAGAGGGGAGATTTCAGCCAATTTGACAAGATTGAACGAGTTCTTAGGGTTCAGAATACCATCATTTGTAAGGCTCAGAAATGA 585 0.3658 MASFAGTTQKCKVCEKKVYWMEQITADHRVYHRSCFRCHHCKGNLKLSNYCYFEGDVYCKPHFDQLFKMTGYLDKSFEGIARIYRAERFGDQVQANNKVSRYFAGTQEKCVGCNKTVYPIEKVNVDGKSYHKSCFRCTHGGCLMSLSNYVTHENLFYCKHHHTQLFKQRGDFSQFDKIERVLRVQNTIICKAQK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03555 194 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vifa5g03555 194 SMART lim_4 109 161 IPR001781 -
Vifa5g03555 194 SMART lim_4 10 62 IPR001781 -
Vifa5g03555 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Vifa5g03555 194 Gene3D Cysteine Rich Protein 5 75 - -
Vifa5g03555 194 Gene3D Cysteine Rich Protein 104 174 - -
Vifa5g03555 194 Pfam LIM domain 11 65 IPR001781 -
Vifa5g03555 194 Pfam LIM domain 110 165 IPR001781 -
Vifa5g03555 194 PANTHER OS06G0237300 PROTEIN 2 79 - -
Vifa5g03555 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Vifa5g03555 194 FunFam LIM domain and actin-binding 1 5 75 - -
Vifa5g03555 194 FunFam LIM domain and actin-binding 1 104 174 - -
Vifa5g03555 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Vifa5g03555 194 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Vifa5g03555 194 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Vifa5g03555 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03555 Vifa-Chr5 1157956672 1157957830 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vifa5g03555 LIM 3.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03555 K09377 - gmx:100792627 321.627