Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03552 ATGGCAGTTGGAACAACGCAACTAACTGCTACCACTTTACAATCGCGATTCTCCGAGTTGACTCGATTCTTGTTCATAGTGCCGTTGATTTGTTCCGAGTTTTGTGTAGATCTGTACCGGTCGGAGCAATCAACGGCGTCGGTCATGTTAATCGATATATTAAAAAAGGTCCAAGGCTTATTGCTGAAATGGATGCTTATATTGTCTTACCTGGTATTTATGATCAAGTTTGGTGCACATGCAACAATTGGAGCAGTGTCCCCGGCCAACCCTCCTTCACACGGTCCTTTCATAAACCCCAGTCACCCCCCTAAAAGTTCACATTTTTCCATCCAATTCAAGAAGAGGAGTGAATGGAAACCTCCAATTTCTGGCTTTAAAGATATTGCTCCTATTCATTCTACGGAAGCTGCAGTCCCTTCTGTTTTGGCTCAGCCACCGTTGACCCATCATGCTTCCAATTGTTGTAAACAAGACATGGTGTTGAAACGAGGCGGTAAGGGTTGCCACTGTGTATATCCCATAAAGCTAGACATTCTTCTTTTGAATGTCTCTCAGAATCCTGATTGGGATAAATTTCTTGAAGAATTAGCTACTCAGCTAGGGTTGCAAAATAATACCCAGATTGACCTGATAAACTTTTATGTGCGCCTAGACCCTGGATTAGTTGGTGGGTACAAACTTCTCAACATAATCTGGTTTGAACCTCCACCTCCGACTCAAGCACCTACTTTAACTGCTTCGCCAGAGAAAGCACCTTTGTATCATTCACCTACGGCTACATTGAGTTCTTCAAATAAGGGAGGGCATTCAAATCTATTTCTCGTTCTTGGAATTGCAATTGGCATGCTCTTCATTGCAATTGTATCTATATTAATATTCTGTCTGTGCACATTGCTGTCAAAGGAAAAAACACCCCCCATTGAAACTGAAAAGCCAAGGATAGAGAGTGCTGTTTCTGCTGGGGGTTCTATTCCCCACCCAACCAGTACACGATTTATTGCTTTTGAAGAACTTAAAGAAGCCACAAACAATTTTGAACCTGCAAGTGTACTTGGAGAAGGAGGGTTTGGTAAGGTTTTTAAAGGTATCTTAAGTGATGGTACTTCTGTTGCAATTAAGAGGCTTACAAATGGAGGGCAACAGGGTGACAAAGAGTTTTTGGCCGAGGTTGAAATGCTTAGTCGGTTGCATCATCGTAACCTTGTAAAATTAGTGGGATACTATAGTAATCGCGAGTCATCACAAAATCTACTTTGCTATGAGCTTGTCCCTAATGGAAGCTTGGAGGCTTGGCTTCATGGTCCCATGGGAATAAACTGCCCTTTAGATTGGGACACCAGAATGAAGATTGCTCTTGACGCTGCAAGAGGACTTTCGTACCTACATGAAGACTCACAACCATGTGCACCTGAAGGCGGAGCTAATTATTTGTCTACCCGTGTCATGGGCACATTTGGGTACGTAGCTCCCGAGTATGCCATGACCGGACACCTGCTTGTTAAAAGTGATGTGTATAGCTATGGAGTTGTCTTGCTAGAACTCCTCACTGGAAGGAAACCTGTGGATATGTCACAGCCATCCGGACAAGAGAACCTTGTTACCTGGGCCAGACCGATCCTTAGAGATAAGGACCGGTTGGATGAGATCGCTGACCCGAAGCTCGGGGGAAATTATCCAAACGAAGATTTTGTACGCGTGTGCACGATTGCAGCAGCATGTGTTGCTCCTGAAGCAAACCAACGTCCGACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGAATCACAGAATACCATGATTCAGTGCTAGCCTCATCCAATACACAGACCAATCTGAGACAGTCCTCTAGCACTTTCGAGTTTGACGGAGCGTCATCAGTGTTCTCTTCAGGCCCTTACTCTGGTCTAAGTGCCGCCTTTGACAATGACAACATTTCTAGGACAGTGGTTTTCTCCGAGGATCTTCATGAAGGTCGATGA 1989 0.4439 MAVGTTQLTATTLQSRFSELTRFLFIVPLICSEFCVDLYRSEQSTASVMLIDILKKVQGLLLKWMLILSYLVFMIKFGAHATIGAVSPANPPSHGPFINPSHPPKSSHFSIQFKKRSEWKPPISGFKDIAPIHSTEAAVPSVLAQPPLTHHASNCCKQDMVLKRGGKGCHCVYPIKLDILLLNVSQNPDWDKFLEELATQLGLQNNTQIDLINFYVRLDPGLVGGYKLLNIIWFEPPPPTQAPTLTASPEKAPLYHSPTATLSSSNKGGHSNLFLVLGIAIGMLFIAIVSILIFCLCTLLSKEKTPPIETEKPRIESAVSAGGSIPHPTSTRFIAFEELKEATNNFEPASVLGEGGFGKVFKGILSDGTSVAIKRLTNGGQQGDKEFLAEVEMLSRLHHRNLVKLVGYYSNRESSQNLLCYELVPNGSLEAWLHGPMGINCPLDWDTRMKIALDAARGLSYLHEDSQPCAPEGGANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLDEIADPKLGGNYPNEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRITEYHDSVLASSNTQTNLRQSSSTFEFDGASSVFSSGPYSGLSAAFDNDNISRTVVFSEDLHEGR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03552 662 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vifa5g03552 662 Gene3D Transferase(Phosphotransferase) domain 1 424 468 - -
Vifa5g03552 662 FunFam Receptor-like serine/threonine-protein kinase ALE2 326 423 - -
Vifa5g03552 662 SUPERFAMILY Protein kinase-like (PK-like) 323 594 IPR011009 -
Vifa5g03552 662 FunFam Receptor-like serine/threonine-protein kinase ALE2 469 614 - -
Vifa5g03552 662 ProSiteProfiles Protein kinase domain profile. 346 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03552 662 PANTHER OS01G0750732 PROTEIN 150 616 - -
Vifa5g03552 662 Gene3D Phosphorylase Kinase; domain 1 315 423 - -
Vifa5g03552 662 Pfam Protein kinase domain 480 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03552 662 Pfam Protein tyrosine and serine/threonine kinase 350 465 IPR001245 GO:0004672|GO:0006468
Vifa5g03552 662 Gene3D Transferase(Phosphotransferase) domain 1 469 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03552 Vifa-Chr5 1157488100 1157494027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03552 85 662 Receptor kinase-like Gene Family AT4G02010 61.883 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa5g03552 Pkinase 2.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03552 - - gmx:100793528 973.77