Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03550 ATGGACAATAATGCATCCCCCCTCCAACTTGAGTCAGGTGAAACATCTTTAGAGGTTAAACCAGAATCTCAAGCATCCAAGAAAAGGAAAATGATTCAGAAAAGGGTTGTGAGTGTGAGGATTGGAGAGAATGTTAGTAAGGTAAAGAATGAAGGATTTCCTTCAGATTTATGGTCATGGAGGAAATATGGACAAAAGCCAATCAAAGGCTCTCCATATCCAAGGGGATATTATAGATGCAGCACATGCAAAGATCCCACTGCCATCTCCGCCACAAATTCAGCTCGACAACCAAAAGAATCCGAAACCGAAACAACCCAAGATCTTCCAATTACCTCCAAGAAAGAAGACCAAGAACATGTAGAACAAGAAATGAATAATACTAAGAGCAATGTGACCGATGATCAAGTAACAAATGAAGAAAAATTTCATTACTTGCAATCTCCCAATAGAAGATCCTTTCAAACTGAGCATGGAAAAACACCATATGGATCTTGTTTTAGAGGAAAAACCACCCTGCTATACAGCACAGTTAAAGAGAGCATTTTTCTCTGGGTGAAAAGGATTCCTGTTGCCCCTTTTTGA 585 0.3949 MDNNASPLQLESGETSLEVKPESQASKKRKMIQKRVVSVRIGENVSKVKNEGFPSDLWSWRKYGQKPIKGSPYPRGYYRCSTCKDPTAISATNSARQPKESETETTQDLPITSKKEDQEHVEQEMNNTKSNVTDDQVTNEEKFHYLQSPNRRSFQTEHGKTPYGSCFRGKTTLLYSTVKESIFLWVKRIPVAPF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03550 194 SMART WRKY_cls 54 98 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03550 194 ProSiteProfiles WRKY domain profile. 49 122 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03550 194 MobiDBLite consensus disorder prediction 1 20 - -
Vifa5g03550 194 MobiDBLite consensus disorder prediction 1 33 - -
Vifa5g03550 194 SUPERFAMILY WRKY DNA-binding domain 50 83 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g03550 194 MobiDBLite consensus disorder prediction 89 108 - -
Vifa5g03550 194 Pfam WRKY DNA -binding domain 56 84 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g03550 194 MobiDBLite consensus disorder prediction 89 118 - -
Vifa5g03550 194 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 14 84 IPR044810 GO:0003700
Vifa5g03550 194 Gene3D WRKY domain 30 106 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03550 Vifa-Chr5 1156947605 1156948901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03550 11 84 WRKY Transcription Factor Family AT3G58710 55.172 4.66e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g03550 WRKY 2.7e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03550 - - gmx:100127368 192.971