Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03547 ATGGCCTCGAATTCTATCGACCATGTCTTTGAATTTCAAGAAAAACTTGGAGGGGGAGAAACAAATGCTCATCAAACTTTGGCGAGTAACATAGATCTGATAAAAAAGAAAATCCAAAAAGATCGAGTCGAATCTATTCAAGAAAAGATTGCTAGGAATGTGAAGAATATTCAATCCCATCTTTCGAGTGCCATGTTTGAAATATCAAGAAATAAATCATTACAAACTGAGAAAAATAATTTTCAAAAGCTTTCTTCAAGAATGGATCATCCTATTTACAAGTTCAATGGCTCAACCACTCAAGCTTTGGAAGAAGATGACAATATCTACAGTCTAGATGCTTCATTTGTGGAAAGTGTCAAGATCCCATACATCAACAAATTGCCACCATATACAGTTTGGATCCCTTTATCTAGAAATGAAAAAATGACGGAAGATGACTCGAGTGATAGAAGAAAAGATGTATTTTATGATCATCGTCAAGGTATAACAATAATATGTAGTGATAGTGATGAAAAGTTTGAAGAGGGCGAGGAAGCTAAACACAACTTTTCAGAAGGTGAAGACACATTTTTGAGGATGGTATTTGAAGAACATGGTTTAGCTGAAGAGGTGTTGAGTATTGTTAGTCATGCAATCGAGCGTCCGAGTTCTGAAATTCTGGAGAGGTATAAAATTATCGAGGAAAATGACCAAAATTCTAAATATCATGAAGAAAGTGAATCTCACATTGAGACATTTTTGAACAAAAGTTTGAGTGAAACTTTAGATGCTTTTGACCCCCTTTTATGTCGTAAATGCATGATCTTTAATTGTTCTTTGCATGGAAATTCTCAAAAGATAATATATCCGAGGAAAAAACAACTAATGTGGTCAGGACCAAAAGATGAACAAAAACCATGTAGTGACCATTGTTACATGATTAATTCAATGGAAGGACAAGTTGAAGAAGACTTTAGTGTTTCAAATTGGAAACTTTTGGAGAAAGAATTATACTTGAAGGGAATAGAAATGTTTGGGAGAAATAGTTGCTTTATATCTAAAAACTTATTTCTTGGATGGAAGACTTGCAAGGAAGTTGCTAGATACATGCAATATGAATCCATGGACCAAAATGGAAAATTTAATGAAATATCATCCAAGCCACGTAGGCATAAAAAAAAGCCCAAACATAAGAGGCTTAAAAATCCTTCAAAGTCAGCCGGAGTTCCATCTAGATGGAAATTAATGACTAATATGCAATATACACCTTGTGAATGTGAAGGTGTGTGTGGAAAGAAATGTTCTTGTGTTGATAATGAAGTTTGTTGTGAAAAATATTGCGGATGTTCTAAGCTATGTGAGAAAAGATTTGGAGGGTGTCATTGTGATAAGGGTCAATGTAAAACTCGAAAATGTCCATGCTTTGCAGCACGTCGAGAATGTGATCCAGATGTATGTCGAAATTGTTGGGTTAGTTGTGGAGACAATTTATTAAAAGAGTCGTCTCATCGTGAAGAAAGTCAATGTAAAAATATGATATTTTTTTTGAAGAAAAAACAAAAGGTTCTTTTGGCAAGGTCTGATGTTAATGGATGGGGGGTTTTCTTAAAGAACTCGGTAAATAAAGATGAATTTATTGGAGAGTATACTGGTGAAATATTAACTAACGAAGAAGCTGATGAACGTGGAAAAGTATATGACAGGGCAAACTTTTCTTATCTTTTTAACTTGAATCATGAGTATTGTCTTGATGCTTATCGCAAAGGAAACAAGTTAAAATTCGCAAATCACTCGACAAATCCCAATTGCTATGCAAAGCTTATGCTTGTTGCTGGAGATCATCGAATGGGAATATTTGCAAAGAAACGCATTGAAGCTGGTGAGGAGCTTTTCGTTGATTACAACTATGATGAAAAACATCGAAGCATAAAATGGTTTCGTGAATTTTTAGATGAAGCTAATTCCAAGAAAATTGATCCAACATTTTCTGTATAA 1977 0.3434 MASNSIDHVFEFQEKLGGGETNAHQTLASNIDLIKKKIQKDRVESIQEKIARNVKNIQSHLSSAMFEISRNKSLQTEKNNFQKLSSRMDHPIYKFNGSTTQALEEDDNIYSLDASFVESVKIPYINKLPPYTVWIPLSRNEKMTEDDSSDRRKDVFYDHRQGITIICSDSDEKFEEGEEAKHNFSEGEDTFLRMVFEEHGLAEEVLSIVSHAIERPSSEILERYKIIEENDQNSKYHEESESHIETFLNKSLSETLDAFDPLLCRKCMIFNCSLHGNSQKIIYPRKKQLMWSGPKDEQKPCSDHCYMINSMEGQVEEDFSVSNWKLLEKELYLKGIEMFGRNSCFISKNLFLGWKTCKEVARYMQYESMDQNGKFNEISSKPRRHKKKPKHKRLKNPSKSAGVPSRWKLMTNMQYTPCECEGVCGKKCSCVDNEVCCEKYCGCSKLCEKRFGGCHCDKGQCKTRKCPCFAARRECDPDVCRNCWVSCGDNLLKESSHREESQCKNMIFFLKKKQKVLLARSDVNGWGVFLKNSVNKDEFIGEYTGEILTNEEADERGKVYDRANFSYLFNLNHEYCLDAYRKGNKLKFANHSTNPNCYAKLMLVAGDHRMGIFAKKRIEAGEELFVDYNYDEKHRSIKWFREFLDEANSKKIDPTFSV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03547 658 MobiDBLite consensus disorder prediction 380 397 - -
Vifa5g03547 658 Pfam SET domain 525 629 IPR001214 GO:0005515
Vifa5g03547 658 Pfam CXC domain 453 484 IPR041355 -
Vifa5g03547 658 Gene3D SET domain 415 631 IPR046341 -
Vifa5g03547 658 FunFam Putative histone-lysine N-methyltransferase EZH2 415 631 - -
Vifa5g03547 658 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 322 636 IPR045318 GO:0006338|GO:0042054
Vifa5g03547 658 ProSiteProfiles SET domain profile. 514 629 IPR001214 GO:0005515
Vifa5g03547 658 SUPERFAMILY SET domain 410 633 IPR046341 -
Vifa5g03547 658 ProSiteProfiles CXC domain profile. 386 500 IPR026489 -
Vifa5g03547 658 MobiDBLite consensus disorder prediction 374 403 - -
Vifa5g03547 658 SMART set_7 514 635 IPR001214 GO:0005515
Vifa5g03547 658 SMART CXC_2 449 486 IPR033467 -
Vifa5g03547 658 CDD SET_EZH 514 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03547 Vifa-Chr5 1156403544 1156414460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03547 503 629 C2H2 Transcription Factor Family AT2G23740 27.778 1.02e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa5g03547 SET 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03547 - - cam:101494145 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03547 5 1156403544 1156414460 Vifa5g03547 5 1156403544 1156414460 ECH
Vifa5g03547 5 1156403544 1156414460 Vifa3g02130 3 528807027 528815356 PCT