Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03542 ATGGCAAAGTCTATTATAAGTGTTCTTCATCTTCTTCTTCTTTTTTCATTATCACATATTTCATTCCAAGTTGCTACATGTGGCTCCATAGTAAAGTTTCTTCCTGGATTCAATGGACCTCTTCCTTTTGTTCTTGAAACTGGGTATGTGGGAGTGGGAGAAAATGATGATGTGCAAGTGTTTTATTATTTCATTGAATCAGAAAACAATCCAAAGAAAGATCCTCTCATGCTTTGGCTCACCGGTGGACCTGGCTGCTCTGCTTTGTCTGGCCTTGTCTTTGAAATTGGTCCACTTGGATTTAGAAAGGAGAACTATAATGGGAGTCTTCCTAATCTAATCTTGAAGCCACATTCATGGACAAAGGTGAGTAGCATTATATTCGTAGATTTGCCTGTATACACAGGCTTCACTTATGCTACAAAAAATTCCAAATCAGATCGAAGCGATTCGATACTAGTTCACCAAACTCATCAATTTCTAAGAAAGTGGTTGGTTGATCATCCAAAATTTCAATCAAATGAAATTTATATTGGTGGTGATTCATACACTGGCATTCCTCTTCCAGCAATTGTTCATAAAATTGTAGAAGGAAATGAAAAAGGTGTCCAACCTTGGATTAATCTCCAGGGATACTTGTTGGGGAACCCATTAACAAACAGAAAGGAAAAAAACTATGCAATCCCTTTTGCTCATGGAATGGGACTCATATCCGATGAATTGTACAAATCACTTCAAATAAATTGTAATGGAGAATATATAAATGTAGAGACCACAAATGTTTTATGTTCTAGAGATGTCAAAGCATTTGAAAAGTGTAAATCGGGACTTAATTCAGCTCATATTTTAGACCCATTATGTGAGTGGCGTGATGATAATGAAAATTTTCTGAGGAGATCTCTAATTAAGAAATACGCCTCCAACTTCCTCACAACAAATCTCGGATTGCCTTCCTTAAGTTGTCGAAGTTATCCCTATTTTCTTTGCGGATTTTGGGCCAATGATGATAATGTTCGCAAAGCTTTGCACATACGTAAGGGGAGTATTGGAAAATGGCATAGGTGTTCCTTTAAGATACCTCATAAGATAGATATCTTTGACAGCTATGACTATCATGTATATCTTAGTAGAAAAGGCATTCGTTCACTAATTTACAGTGGAGATCATGACATGACAGTTCCATTCTTAGCAACACAAGCATGGATTAGATCTTTAAACTATTCCATTGTTGATGATTGGAGACAGTGGCATACAAATGACCAAGTTGCAGGATACACAAGAACTTACTCTAATCAGATGACATTTGCAACTGTGAAGGGTGGAGGACACACAGCTCCAGAGTTTCGACCTAAAGAATGTTTTGACATGTTTAGTAGGTGGATATCAAAGAAGGCTTTGTAG 1401 0.3712 MAKSIISVLHLLLLFSLSHISFQVATCGSIVKFLPGFNGPLPFVLETGYVGVGENDDVQVFYYFIESENNPKKDPLMLWLTGGPGCSALSGLVFEIGPLGFRKENYNGSLPNLILKPHSWTKVSSIIFVDLPVYTGFTYATKNSKSDRSDSILVHQTHQFLRKWLVDHPKFQSNEIYIGGDSYTGIPLPAIVHKIVEGNEKGVQPWINLQGYLLGNPLTNRKEKNYAIPFAHGMGLISDELYKSLQINCNGEYINVETTNVLCSRDVKAFEKCKSGLNSAHILDPLCEWRDDNENFLRRSLIKKYASNFLTTNLGLPSLSCRSYPYFLCGFWANDDNVRKALHIRKGSIGKWHRCSFKIPHKIDIFDSYDYHVYLSRKGIRSLIYSGDHDMTVPFLATQAWIRSLNYSIVDDWRQWHTNDQVAGYTRTYSNQMTFATVKGGGHTAPEFRPKECFDMFSRWISKKAL 466
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03542 466 Gene3D alpha/beta hydrolase 40 466 IPR029058 -
Vifa5g03542 466 Pfam Serine carboxypeptidase 35 462 IPR001563 GO:0004185|GO:0006508
Vifa5g03542 466 FunFam Carboxypeptidase 320 465 - -
Vifa5g03542 466 SUPERFAMILY alpha/beta-Hydrolases 31 464 IPR029058 -
Vifa5g03542 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Vifa5g03542 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vifa5g03542 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Vifa5g03542 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Vifa5g03542 466 FunFam Serine carboxypeptidase-like 11 25 466 - -
Vifa5g03542 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 450 IPR001563 GO:0004185|GO:0006508
Vifa5g03542 466 FunFam Carboxypeptidase 369 463 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa5g03542 Vifa-Chr5 1155811999 1155823175 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03542 25 54 Calmodulin-binding Proteins AT2G22960 73.333 1.89e-08 52.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03542 K16296 - gmx:100792006 757.673