Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03520 ATGGCGACGAGAAATCGAACTTCAGAGTTCAGAAAGTACAGAGACACCGTCAAAAGCTTACGCACTCCTCTTTCTTCGTCAGCTTCCGCTTCTTCCGGTGGTCCTGTCATCGAAATGGTTAGCACTTCGCTTCTTCGTTCCAGTAATGGATCTTCCTATACTCCTCTCAGTACCCAAGACCCAGGTCCCTCCTCTAGTGATGCGTTTACTGTGGGTATGCCGCCGTCTTGGGTGGATGATTCTGAAGAAATAGCGACGAATATACAGAGTGCAAAGGTTAAAATGTCTGAGTTAACGAAAGCTCATGCAAAGGCTTTGATGCCTTCCTTTGGTGATGGTAAAGATGATCAGCGTCAGATTGAGACGCTAACTCGGGAAATTACAGCTCTCATTAGAAAATCTGAATTGAGGCTAAAAAAACTCTCTGCTGGTAGAGGATCTTCTGAGGAATCTAATGTCAGAAAAAATGTGCAGCGTTCGCTTGCTACAGACCTTCAGAGCCTGTCAATGGACCTCCGGCGGAAGCAGTCAGCATATTTAAAACGTTTGCAGAAACAACAAGAGGGTTATGATGGGATTGATCTGGAGATTAACTTTAATGGGAGTAAATCTGGATTGCAGGATGATGGATTCGATGATGTGGGTTTTAGTGAAGCGCAAATGACAAAGCTAAAGAAACATGAGCACATCTCAGCGGAAAGAGAAAGAGAAATCGATCAGGTCGCTAGTTCAGTCCACGAACTTGCTCAGATCATGAAGGATCTCTCTGTCCTTGTGATAGACCAGGGAACAATTGTAGATAGAATCGACTACAACATTCAGAGTGTCGCTACAACTGTTGAGGAGGGCTTTAAGCAGTTACAAAAGGCGGAAAGAACACAGAAAAAAGGAGGGATGATTACATGTGCCACTGTGCTTGTTATCATGTGCTTTGTCATGCTAGTTCTGTTGATAATCAAGGAGATAATCTTCTAG 975 0.439 MATRNRTSEFRKYRDTVKSLRTPLSSSASASSGGPVIEMVSTSLLRSSNGSSYTPLSTQDPGPSSSDAFTVGMPPSWVDDSEEIATNIQSAKVKMSELTKAHAKALMPSFGDGKDDQRQIETLTREITALIRKSELRLKKLSAGRGSSEESNVRKNVQRSLATDLQSLSMDLRRKQSAYLKRLQKQQEGYDGIDLEINFNGSKSGLQDDGFDDVGFSEAQMTKLKKHEHISAEREREIDQVASSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGFKQLQKAERTQKKGGMITCATVLVIMCFVMLVLLIIKEIIF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03520 324 Gene3D - 73 282 - -
Vifa5g03520 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Vifa5g03520 324 FunFam Syntaxin-43 74 282 - -
Vifa5g03520 324 MobiDBLite consensus disorder prediction 48 71 - -
Vifa5g03520 324 CDD SNARE_syntaxin16 232 289 - -
Vifa5g03520 324 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa5g03520 324 MobiDBLite consensus disorder prediction 19 36 - -
Vifa5g03520 324 PANTHER SYNTAXIN 79 310 IPR045242 -
Vifa5g03520 324 SUPERFAMILY t-snare proteins 73 283 IPR010989 GO:0016020|GO:0016192
Vifa5g03520 324 MobiDBLite consensus disorder prediction 1 36 - -
Vifa5g03520 324 Pfam SNARE domain 264 316 IPR000727 -
Vifa5g03520 324 SMART SynN_4 68 184 IPR006011 GO:0016020
Vifa5g03520 324 MobiDBLite consensus disorder prediction 1 18 - -
Vifa5g03520 324 SMART tSNARE_6 223 290 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03520 Vifa-Chr5 1150237220 1150242620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03520 1 324 SNARE and Associated Proteins AT4G02195 68.000 2.90e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03520 K08489 - gmx:100803629 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03520 5 1150237220 1150242620 Vifa5g03520 5 1150237220 1150242620 ECH
Vifa5g03520 5 1150237220 1150242620 Vifa3g01973 3 496165913 496171114 ECH