Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03518 ATGGCGACGAGAAATCGAACTTCAGAGTTCAGAAAGTACAGAGACACCGTCAAAAGCTTACGCACTCCTCTTTCTTCGTCAGCTTCCGCTTCTTCCGGTGGTCCTGTCATCGAAATGGTTAGCACTTCGCTTCTTCGTTCCAGTAATGGATCTTCCTATACTCCTCTCAGTACCCAAGACCCAGGTCCCTCCTCTAGTGATGCGTTTACTGTGGGTATGCCGCCGTCTTGGGTGGATGATTCTGAAGAAATAGCGACGAATATACAGAGTGCAAAGGTTAAAATGTCTGAGTTAACGAAAGCTCATGCAAAGGCTTTGATGCCTTCCTTTGGTGATGGTAAAGATGATCAGCGTCAGATTGAGACGCTAACTCGGGAAATTACAGCTCTCATTAGAAAATCTGAATTGAGGCTAAAAAAACTCTCTGCTGGTAGAGGATCTTCTGAGGAATCTAATGTCAGAAAAAATGTGCAGCGTTCGCTTGCTACAGACCTTCAGAGCCTGTCAATGGACCTCCGGCGGAAGCAGTCAGCATATTTAAAACGTTTGCAGAAACAACAAGAGGGTTATGATGGGATTGATCTGGAGATTAACTTTAATGGGAGTAAATCTGGATTGCAGGGTGATGGATTCGATGATGTGGGTTTTAGTGAAGCGCAAATGACAAAGCTAAAGAAACATGAGCACATCTCAGCGGAAAGAGAAAGAGAAATCGATCAGGTCGCTAGTTCAGTCCACGAACTTGCTCAGATCATGAAGGATCTCTCTGTCCTTGTGATAGACCAGGGAACAATTGTAGATAGAATCGACTACAACATTCAGAGTGTCGCTACAACTGTTGAGGAGGGCTTTAAGCAGTTACAAAAGGCGGAAAGAACACAGAAAAAAGGAGGGATGATTACATGTGCCACTGTGCTTGTTATCATGTGCTTTGTCATGCTAGTTCTGTTGATAATCAAGGAGATAATCTTCTAG 975 0.44 MATRNRTSEFRKYRDTVKSLRTPLSSSASASSGGPVIEMVSTSLLRSSNGSSYTPLSTQDPGPSSSDAFTVGMPPSWVDDSEEIATNIQSAKVKMSELTKAHAKALMPSFGDGKDDQRQIETLTREITALIRKSELRLKKLSAGRGSSEESNVRKNVQRSLATDLQSLSMDLRRKQSAYLKRLQKQQEGYDGIDLEINFNGSKSGLQGDGFDDVGFSEAQMTKLKKHEHISAEREREIDQVASSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGFKQLQKAERTQKKGGMITCATVLVIMCFVMLVLLIIKEIIF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03518 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Vifa5g03518 324 FunFam Syntaxin-43 74 282 - -
Vifa5g03518 324 MobiDBLite consensus disorder prediction 48 71 - -
Vifa5g03518 324 CDD SNARE_syntaxin16 232 289 - -
Vifa5g03518 324 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa5g03518 324 MobiDBLite consensus disorder prediction 19 36 - -
Vifa5g03518 324 Gene3D - 73 282 - -
Vifa5g03518 324 MobiDBLite consensus disorder prediction 1 36 - -
Vifa5g03518 324 Pfam SNARE domain 264 316 IPR000727 -
Vifa5g03518 324 SMART SynN_4 68 184 IPR006011 GO:0016020
Vifa5g03518 324 MobiDBLite consensus disorder prediction 1 18 - -
Vifa5g03518 324 PANTHER SYNTAXIN 79 310 IPR045242 -
Vifa5g03518 324 SMART tSNARE_6 223 290 IPR000727 -
Vifa5g03518 324 SUPERFAMILY t-snare proteins 73 283 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03518 Vifa-Chr5 1150173456 1150178901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03518 1 324 SNARE and Associated Proteins AT4G02195 68.000 7.85e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03518 K08489 - gmx:100803629 488.419