Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03513 ATGAGAGGAAAACCAGCATTGCTAGCTCTTAAACCAATCTTGACCACAGTTTTTGTTCTACTATTTTCAGTAACCAGTTTCTCAAAACTAGCAACAAAACACCAAACAAACCATTTTCATTTCCAAAACCATCTCCAAGTAGCCAATTTAGCATGCGAAGGAACACTCTATCCAAACCTTTGTGTCTCAACTCTATCCACTTTCCCAGATCTTACCTCAAAAACAATCCCACAATTGATTTCTTCCATCCTCAACTACACCATAAAAGAAGTTAAACAATCCTCCTCCAATGTGACCGGTCTTCGAGTCCGAACCAGAAGTCTCAAAAAAACACTCGAACAAAGAGCTCTTGAAGATTGCACCAATCTCTTCGACACCACAATTGAAGAACTCAAAACCAGCATTTCTGATCTCTCTCAAACTCCAACCACAATAGCTCTTCACAATAAACGTGACTGTCAAACGCTACTGAGCGGCGCAATGACGAATATGTACACATGTTTGGATGGTTTTGCTTATAGTAAAAGTAACATAAGACACAAAATTGAGAATCGGTTGTATGATATTTCCAAACACGTTAGTAATACACTTGCCATGTTGAAGAAAGTTCCGGCAGTGAAATCCAAAACTTCCAACTCCGAGGCTTTCCCTGAATATGGTGAGATGAAAGACGGGTTTCCGTCGTGGCTAACCACCAAAGATCGGAAGCTACTACAAGTTGCAGCGAATCAAACCAAGTTCAATCTCGTGGTTGCTAAAGATGGAACAGGAAATTTTACCACTATAGGAGATGCATTGTCTGCCGCTCCAAATTCTAGCACAACTAGGTTTGTGATATATATAAAATCTGGGGCTTATTTGGAGAATGTGGAAGTGATAAGGAAAAAGACTAATTTGATGTTGGTAGGAGATGGAATTGGAAAGACAGTTGTGAAGGCAAGTAGAAATGTGGTAGATGGGTGGACCACTTTTCAATCAGCCACTTTTGCTGTTGTGGGAGACAGATTCATAGCAAAGGGTATAACCTTTGAGAACTCAGCTGGAGCTAGCAAACACCAAGCCGTAGCCGTGAGAAGTGGCGCCGATTTCTCAGTCTTCTACCAATGCAGCTTTGTGGCTTTCCAAGACACACTCTATGTCCACTCCCTCCGTCAATTCTACCGCGAATGTGATGTTTATGGCACGGTAGACTTCATCTTTGGCAACGCGGCCGTAGTTTTCCAAAACTGCAACCTATATGCGCGTAAACCCGATCCAAACCAAAAGAATCTATTCACTGCACAGGGAAGAGAAGATCCTAACCAAAACACAGGAATTTCAATCCTGAACTGCAAGGTTGCGGCCGCTGCGGATTTGATTCCGGTAAAATCAACGTTCAAGAGTTACCTCGGTCGTCCTTGGAAAAAATATTCAAGAACAGTTTATTTAAATTCTGTTATAGAGGATTTGATAGATCCAGCAGGATGGTTAGAGTGGAATGGAACGTTTGCGTTGGACACATTGTACTATGGCGAGTATCAGAATCGGGGTCCGGGTTCGAACACGAGTGCTAGGGTTAATTGGCCAGGTTACAAAGTTATTACTAATGCAACTGAGGCAAGTCAATTCACTGTTAGGCAATTTATTCAAGGCACTGAGTGGTTGAACTCTACTGGTATTCCATTTTTCCTTGATTTGAGTTGA 1683 0.4189 MRGKPALLALKPILTTVFVLLFSVTSFSKLATKHQTNHFHFQNHLQVANLACEGTLYPNLCVSTLSTFPDLTSKTIPQLISSILNYTIKEVKQSSSNVTGLRVRTRSLKKTLEQRALEDCTNLFDTTIEELKTSISDLSQTPTTIALHNKRDCQTLLSGAMTNMYTCLDGFAYSKSNIRHKIENRLYDISKHVSNTLAMLKKVPAVKSKTSNSEAFPEYGEMKDGFPSWLTTKDRKLLQVAANQTKFNLVVAKDGTGNFTTIGDALSAAPNSSTTRFVIYIKSGAYLENVEVIRKKTNLMLVGDGIGKTVVKASRNVVDGWTTFQSATFAVVGDRFIAKGITFENSAGASKHQAVAVRSGADFSVFYQCSFVAFQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKSYLGRPWKKYSRTVYLNSVIEDLIDPAGWLEWNGTFALDTLYYGEYQNRGPGSNTSARVNWPGYKVITNATEASQFTVRQFIQGTEWLNSTGIPFFLDLS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03513 560 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Vifa5g03513 560 Pfam Pectinesterase 248 544 IPR000070 GO:0030599|GO:0042545
Vifa5g03513 560 Pfam Plant invertase/pectin methylesterase inhibitor 51 199 IPR006501 GO:0004857
Vifa5g03513 560 SUPERFAMILY Pectin lyase-like 245 557 IPR011050 -
Vifa5g03513 560 FunFam Pectinesterase 242 559 - -
Vifa5g03513 560 SMART PMEI_2 43 199 IPR006501 GO:0004857
Vifa5g03513 560 CDD PMEI-like_3 50 205 - -
Vifa5g03513 560 NCBIfam pectinesterase inhibitor domain 17 202 IPR006501 GO:0004857
Vifa5g03513 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 203 IPR035513 -
Vifa5g03513 560 Gene3D - 242 559 IPR012334 -
Vifa5g03513 560 PANTHER PECTINESTERASE 22 549 - -
Vifa5g03513 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 204 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03513 Vifa-Chr5 1148939550 1148942543 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03513 72 559 Carbohydrate Esterase AT4G02320 54.672 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03513 K01051 - gmx:100813592 825.083