Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03511 ATGGGTTCCAAGTTATGCAATCCTCTCTCAATATGTTTGATTCTCTTATTCTCCTCTATAGCATTCTCAGACACCATTAGTCCAAATCCAATAACAACTACTTCACCCGGAACCGCATGCAAATCCACACCGGATCCAACCTATTGCAGATCCGTTCTCCCTCCTCAAAACGGAAATGTCTACGATTACGCTCGATTCTCCGTCAAGAAATCACTATCACAGTCCCGAAAATTCTCAAACCTTATCAACGTATATCTCCAGCGTCGCTCAACTCTCTCCGCCACCGCTATTCGTGCTCTCCAAGATTGTCAATCCCTCAGCGACCTCAACTTCGATTTTCTTTCAAGTTCCTTTCAGACAGTTAACAAAACAACAAAGTTTCTTCCAAATTTACAAGCTGACAACATCCAAACACTACTTAGTGCCATTCTAACCAACCAACAGACATGTTTAGATGGTCTTAAAGACATTTCTTCCACTAATGGAGTCACAATCCCTATTTCTAACGACACGAAACTCTACAGTGTCTCTCTAGCTTTCTTCACCAAAGGATGGGTCCCCAAAACCAAACCAAAAACCTCGTTTCATAATAATCTGCATCCCTCATTTCGTAACGGGCGATTACCCCTTAAAATGTCGAGCAAAACACGCGCCATTTATGAATCCGTTAGTCGGAGAAAGCTTCTCCAGAGTGATCAAGTTGGTGAGAATGTTGTGGTGAGAGATATTGTGACGGTTAGTCAAGATGGGAGTGGAAATTTTACAACCATCAATGACGCCATTGCTGCAGCTCCAAATAAATCTCTTTCTACTGATGGCTATTTCTTGATCTATGTTACTGCTGGTGTTTATGAAGAGTATGTCAATATTGATAAGAAAAAGACTTATTTGATGATGATCGGAGACGGTATCAACAAGACTATCATCACCGGTAATCATAGCGTTGTTGATGGCTGGACCACATTCGGCTCCCCAACTTTAGCTGTGGTTGGGCAAGGTTTCGTGGGCGTGAACATGACGATCCGTAACACTGCCGGTGCTATAAAGCACCAAGCAGTAGCACTTCGTAACGGAGCAGATTTATCAACCTTCTACAGCTGCAGTTTCGAAGGTTACCAAGACACACTATACACACATTCCCTAAGACAATTCTACCGAGAATGCGATATCTACGGAACAGTAGATTTCATCTTCGGAAACGCAAAGGTTGTCTTCCAAAACTGTAACCTCTATCCTCGTCTACCAATGACTGGACAATTCAACGCGATAACAGCGCAAGGCCGAACCGATCCAAACCAAGACACAGGTACTTCAATCCACAACTGTACAATCAAAGCTTCTGACGATTTAGCTTCCAGCAATAGCACTGTTTCGACTTACCTAGGAAGACCATGGAAGGAATATTCTAGAACTGTTTATATGCAAACATTTATGGATAATGTTGTTGATGGTTCTGGATGGCGTGCTTGGGATGGAGAATTTGCATTGAGTACTTTGTATTATGCTGAGTTTAATAATACAGGACCGGGGTCTAATACTGATGGAAGGGTCACGTGGCAAGGTTATCATGTGATTAATGCTACTGATGCTGCTAATTTTACTGTGTCGAATTTCTTGCTTGGTGATAATTGGTTGCCTCAGACAGGAGTGTCTTATGATAATAACTTGATTAGTAATTAA 1680 0.4202 MGSKLCNPLSICLILLFSSIAFSDTISPNPITTTSPGTACKSTPDPTYCRSVLPPQNGNVYDYARFSVKKSLSQSRKFSNLINVYLQRRSTLSATAIRALQDCQSLSDLNFDFLSSSFQTVNKTTKFLPNLQADNIQTLLSAILTNQQTCLDGLKDISSTNGVTIPISNDTKLYSVSLAFFTKGWVPKTKPKTSFHNNLHPSFRNGRLPLKMSSKTRAIYESVSRRKLLQSDQVGENVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSLSTDGYFLIYVTAGVYEEYVNIDKKKTYLMMIGDGINKTIITGNHSVVDGWTTFGSPTLAVVGQGFVGVNMTIRNTAGAIKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNLYPRLPMTGQFNAITAQGRTDPNQDTGTSIHNCTIKASDDLASSNSTVSTYLGRPWKEYSRTVYMQTFMDNVVDGSGWRAWDGEFALSTLYYAEFNNTGPGSNTDGRVTWQGYHVINATDAANFTVSNFLLGDNWLPQTGVSYDNNLISN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03511 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 183 IPR035513 -
Vifa5g03511 559 CDD PMEI-like_3 38 185 - -
Vifa5g03511 559 SUPERFAMILY Pectin lyase-like 240 553 IPR011050 -
Vifa5g03511 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 183 IPR035513 -
Vifa5g03511 559 Pfam Pectinesterase 244 542 IPR000070 GO:0030599|GO:0042545
Vifa5g03511 559 PANTHER PECTINESTERASE 20 546 - -
Vifa5g03511 559 NCBIfam pectinesterase inhibitor domain 10 182 IPR006501 GO:0004857
Vifa5g03511 559 FunFam Pectinesterase 37 183 - -
Vifa5g03511 559 SMART PMEI_2 31 180 IPR006501 GO:0004857
Vifa5g03511 559 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Vifa5g03511 559 Gene3D - 238 556 IPR012334 -
Vifa5g03511 559 FunFam Pectinesterase 237 556 - -
Vifa5g03511 559 Pfam Plant invertase/pectin methylesterase inhibitor 38 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03511 Vifa-Chr5 1148582569 1148584362 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03511 9 558 Carbohydrate Esterase AT4G02330 62.982 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03511 K01051 - gmx:100800971 907.901