Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03507 ATGGGTATCGATTTGAAGGCCGGGGGTAAGTCCAAGAAGACCAAACGAACCGCACCAAAATCCAATGATATCTACCTCAAGCTTCTCGTCAGGCTTTACCGTTTCCTTGTTCGGAGGACTCCCAGTAGATTCAATAAGGTTATCCTTAAGCGTCTTTTCATGAGCAAAGTTAACAGACCTCCGCTATCTCTCTCTAGGTTGATTCGATTCACGAAGGGAAAGGAGGGTAAGATTGCTGTTGTTGTGGGTACTGTGACCGATGATATTCGTGTTTATGATGTGCCTGCGATTAAGGTTACTGCTTTAAGGTTCACAGAGACTGCCAGAGCTAGAATTGTGAAGGCTGGTGGGGAGTGCCTTACCTTTGATGAACTAGCTGTTAGAGCACCTTTAGGGGAGAAGTCGGTTCTTTTAAGAGGTCCCAAAAATGCTCGTGAGGCTGTCAAGCACTTTGGAAGAGCTCCTGGTGTGCCTCACAGTCACACCAAGCCCTACATCCGTTCTAAAGGACGCAAGTTTGAGAAGGCCAGAGGAAAGAGGAAGAGCAGAGGCTTTAGAGTTTGA 564 0.4699 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVRLYRFLVRRTPSRFNKVILKRLFMSKVNRPPLSLSRLIRFTKGKEGKIAVVVGTVTDDIRVYDVPAIKVTALRFTETARARIVKAGGECLTFDELAVRAPLGEKSVLLRGPKNAREAVKHFGRAPGVPHSHTKPYIRSKGRKFEKARGKRKSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03507 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 138 IPR036227 -
Vifa5g03507 187 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Vifa5g03507 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vifa5g03507 187 Gene3D - 1 187 - -
Vifa5g03507 187 FunFam 60S ribosomal protein L18 1 187 - -
Vifa5g03507 187 MobiDBLite consensus disorder prediction 151 187 - -
Vifa5g03507 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vifa5g03507 187 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03507 Vifa-Chr5 1148052159 1148053942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03507 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 75.269 4.08e-100 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03507 K02883 - pop:7487794 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03507 5 1148052159 1148053942 Vifa5g03507 5 1148052159 1148053942 ECH