Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03506 ATGTCTGGAGAATCCGCCACCGCTATTCACAAGGGTCAAGTTGATCTCTTAGGCTTCATAGATTGGATTGGTGTTGAATGCCTCAATCAAAGCACCACTCTCTCTGTTTCCAGTGCTATCAAACAGGGTTATAGAGAAGATAAAGGTTTTCATCTAGAAATTGATGCATATGAACAGTTTTTGCTTTATATTGCTTTCACCCAAGTTATTAAACTTTATTCCATTATTGTCAAAGGTCCTGAAGATAAAGGAGGTGCTGAAAGGGAACAAGGATTACTTCAGATACTGACTGAGATGGACGGATTCAAAGTTTCCACAGCACAGGTGCTTGTGATAGGTGCTACAAATAGATTGGATATTATTGATCCTGCTCTTTTGTGGAAGGGTCGTTTCGACAAGATCATTAGAGTTGGTTTGCCTTTAAGAGATGGAAGACTTGCCATTTTGAAGGTGCATGCTATGAATAAGTATTTTCGCTTAGAAGAAGAAAAAGATACTCTGCTTAACGAAATTGTAGAGCTAACAGAAGATTTTACTGGGGCAGAGCTGCAGAATATACTGAACGAAGCTGGAATTTTAACGGCCAGGAAGGATTTGGATTATATTGGGCGTGACGAGTTGCTTGAGGCATTAAAAAGGCAAAAAGGAACATTTGAAACAGGGCAAGAGGACACTACAGAAATTCCTGAAGAACTGAGACTGAGATTGGCATATAGAGAAGATATGGAAACTAGTAAAATACCCGTGCTCCTTCACCGTGTATCATTGGTCTTTTTGAAACAGCTAGAAATCCAAACAGAAATGATATTTGCTACAGACTCACAAATGCATCCCAACTACGCAAGTGATAATGCGACTGATATAAGTTCTATTTGCAGCCAGCCAAATATGTCTTATAGTGAAGTTTCTGGAAAGGTTTTTTCTAGAAAATCAGATTACATAAACTCTATAGTGCGTTCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTCGGGATAGACAACTTGTGTTGGATGTCTGCAAATGCTTGTTTAACCATATCTGTGTTTTGTAGGCTCTGTTGCGGTGCTACTTTTATGTTTGCTGTCTGTTTTGCTCAAATGGTTTGTGGTTCTTGTAGACGTCTGCTTTCGTATCCATCAGGTCATTTCTTCCCTGCAGCTGATCAGGTCGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGCGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGCCATTTAAGGAACATGTTCAGTCGGAAGTTTTTGGATATAATGCTTGTAATACCTCCACCAAGAACAAGGATATAGAGGATCATTGGAAAGGCATTTGGAATCTGAGTGTTACTAAAAGAATAAGGGTTTTTGTGTGGATGATATATCATAATGGAATCAAAACCAACCAATATCTAAACCACTTGAATCTTCCAGATAATTTGTGTGATTACTGTGATGGAAAATGTAGTAGTGTTGTAGCTGAGCTTTGGTGA 1527 0.3949 MSGESATAIHKGQVDLLGFIDWIGVECLNQSTTLSVSSAIKQGYREDKGFHLEIDAYEQFLLYIAFTQVIKLYSIIVKGPEDKGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDIIDPALLWKGRFDKIIRVGLPLRDGRLAILKVHAMNKYFRLEEEKDTLLNEIVELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDTTEIPEELRLRLAYREDMETSKIPVLLHRVSLVFLKQLEIQTEMIFATDSQMHPNYASDNATDISSICSQPNMSYSEVSGKVFSRKSDYINSIVRSCAPRVIEEEMFGIDNLCWMSANACLTISVFCRLCCGATFMFAVCFAQMVCGSCRRLLSYPSGHFFPAADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGPFKEHVQSEVFGYNACNTSTKNKDIEDHWKGIWNLSVTKRIRVFVWMIYHNGIKTNQYLNHLNLPDNLCDYCDGKCSSVVAELW 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03506 508 NCBIfam zinc finger domain, LSD1 subclass 367 382 IPR005735 -
Vifa5g03506 508 NCBIfam zinc finger domain, LSD1 subclass 393 421 IPR005735 -
Vifa5g03506 508 Gene3D - 140 216 - -
Vifa5g03506 508 Pfam LSD1 zinc finger 396 420 IPR005735 -
Vifa5g03506 508 Pfam AAA+ lid domain 168 208 IPR041569 -
Vifa5g03506 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 222 IPR027417 -
Vifa5g03506 508 ProSiteProfiles PITH domain profile. 5 196 IPR010400 -
Vifa5g03506 508 Pfam ATPase family associated with various cellular activities (AAA) 82 138 IPR003959 GO:0005524|GO:0016887
Vifa5g03506 508 SUPERFAMILY Galactose-binding domain-like 6 83 IPR008979 -
Vifa5g03506 508 PANTHER METALLOPROTEASE M41 FTSH 82 342 - -
Vifa5g03506 508 FunFam Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic 140 223 - -
Vifa5g03506 508 Pfam PITH domain 16 82 IPR010400 -
Vifa5g03506 508 Coils Coil 157 177 - -
Vifa5g03506 508 Gene3D PITH domain 2 98 IPR037047 -
Vifa5g03506 508 Pfam zinc-binding in reverse transcriptase 441 498 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03506 Vifa-Chr5 1148002394 1148006964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03506 87 213 Miscellaneous Gene Families AT3G47060 45.669 4.70e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa5g03506 zf-RVT 7.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03506 - - cpap:110824568 364.77