Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03498 ATGAGCAGACGTTCGAGCAGAACCGTTTATGTTGGGAATCTACCCGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTCATGAAGTATGGACACATAGCTCACATTGACCTAAAGGTTCCGCCAAGGCCCCCTGGCTATGCATTTGTAGAGTTTGATGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGTTATGATTTTGACGGGCATCGGTTAAGGGTGGAGGCTGCTCATGGGGGTCGTGGTACTGGTAATTCATCTTCAAGAGATAGACATAGTAGTCAAAGCAATGGCAGGGGTGGACGTGGAGTATCCAGGCGCTCTGAATACCGTGTTCTAGTTAGTGGATTGCCATCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCACGATGGAAGGGGTACTACTGGAATTGTGGATTACACAAACTATGATGATATGAAATATGCTATCAAAAAGCTTGATGACTCTGAGTTCAGAAACGCATTTTCCAAGTCTTATGTTCGGGTGAGGGAATATGATTCGAGGCGGGACTCAAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTACAGCCGTAGCCGTAGCCGCAGTCGTAGTGACAGCCCTGTGCGGAGCCCAAGCAAATCTCCAAAGGCTAAATCCTCACAACGATCACCTGCTAAATCTCCAGCCAGATCGGTTTCTCGTTCTCGCTCAAGATCTAGGTCCCGTTCTTTATCAGGATCACGGTCAAGGTCAAGATCTCCATTACCTCTGCGTAACAAAAGCCCTATAAAGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGTCCAAGTAGGAGCCGAAGCAAAAGTCTATCCAGGTAA 909 0.4774 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHIAHIDLKVPPRPPGYAFVEFDDAQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGNSSSRDRHSSQSNGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPSRGPSHSRGRSYSRSRSRSRSDSPVRSPSKSPKAKSSQRSPAKSPARSVSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPIKRSASRSPSRSRSPSRSRSKSLSR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03498 302 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Vifa5g03498 302 CDD RRM1_SF2_plant_like 8 78 - -
Vifa5g03498 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vifa5g03498 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Vifa5g03498 302 MobiDBLite consensus disorder prediction 278 302 - -
Vifa5g03498 302 FunFam serine/arginine-rich splicing factor SR34A-like 113 190 - -
Vifa5g03498 302 MobiDBLite consensus disorder prediction 80 110 - -
Vifa5g03498 302 MobiDBLite consensus disorder prediction 186 302 - -
Vifa5g03498 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vifa5g03498 302 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 112 - -
Vifa5g03498 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Vifa5g03498 302 MobiDBLite consensus disorder prediction 222 247 - -
Vifa5g03498 302 CDD RRM2_SF2_plant_like 113 188 - -
Vifa5g03498 302 Gene3D - 113 190 IPR012677 -
Vifa5g03498 302 MobiDBLite consensus disorder prediction 186 201 - -
Vifa5g03498 302 Gene3D - 2 112 IPR012677 -
Vifa5g03498 302 MobiDBLite consensus disorder prediction 84 105 - -
Vifa5g03498 302 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 265 - -
Vifa5g03498 302 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vifa5g03498 302 SMART rrm1_1 114 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03498 Vifa-Chr5 1145850467 1145854715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03498 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 1.32e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03498 K12890 - gmx:100796900 332.028