Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03494 ATGAAGTTCTGCAAAAAATACCAGCAATACATGCAAGGCCAGGAGAATAAGAAACTTCCTGAGGTTGGATTGAAGAAGCTCAAGAAGATCTTGAAGAAGTGCCGTAGAGATCATTCTCATTCTCATTCCTATAAAGCATCTCAAACCTGTCCCAACCAGTGCCCAGTGTGTGATGGAACGTTCTTCCCTTCACTTCTGAGTGAAATGTCTGAGATAGTTGGATGCTTTAATCAACGTGCACAGAAATTGCTTGAGCTTCATCTTGCTTCTGGTTTCAGAAAGTACCTTTTATGGTTCAAAGGGAAGTTTCATAAAAATCACACTGCTCTTATTCAAGAAGGTGAAGATCTTGTTACTTATGCACTCATCAACGCTACCGCAATCCGTAAAATTCTAAAGAAATATGATAAGGTTCATTATTCGAAACAAGGGCAATTGTTTAAGTCACAGGTCCAAAGTATGCACAAGGAAATTCTACAAAGTCCATGGCTTTGTGAGCTTATGGCTTTCCACATCAATTTAAGAGAAACTAAGGTCGATTCAAGGAAGGAAACAGCTTTGTTTGATGAATGTTCTTTAACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTATTTGATTCTGCAAAAATTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTAACTTGTGGTCATATATTCTGTTACATTTGTGCTTGCTCGGCTGCATCGGTATCTATTGTCGATGGACTTAAGGCCGCAAATCCTAAACAAAAATGTCCTCTATGCCGCGAGCGCGCGACTTATGAAGGTGCTGTGCATTTGGAAGAACTTAATATTCTGTTAGGCCGAAGCTGCCAGGAATATTGGGAACAAAGGCTTCAATCTGAGAGGGTAGAAAGGATTAAGCAAATAAAGGAACATTGGGATTCACAGTGTAGAGCTTTCATGGGTGTTTAG 969 0.3953 MKFCKKYQQYMQGQENKKLPEVGLKKLKKILKKCRRDHSHSHSYKASQTCPNQCPVCDGTFFPSLLSEMSEIVGCFNQRAQKLLELHLASGFRKYLLWFKGKFHKNHTALIQEGEDLVTYALINATAIRKILKKYDKVHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVDSRKETALFDECSLTFKDGKPSLTCELFDSAKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAANPKQKCPLCRERATYEGAVHLEELNILLGRSCQEYWEQRLQSERVERIKQIKEHWDSQCRAFMGV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03494 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 320 IPR013083 -
Vifa5g03494 322 SMART ring_2 218 266 IPR001841 -
Vifa5g03494 322 Pfam Zinc finger, C3HC4 type (RING finger) 215 269 - -
Vifa5g03494 322 ProSitePatterns Zinc finger RING-type signature. 233 242 IPR017907 -
Vifa5g03494 322 ProSiteProfiles Zinc finger RING-type profile. 218 267 IPR001841 -
Vifa5g03494 322 ProSiteProfiles SPX domain profile. 1 149 IPR004331 -
Vifa5g03494 322 CDD SPX_BAH1-like 2 145 - -
Vifa5g03494 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 321 IPR033326 -
Vifa5g03494 322 SUPERFAMILY RING/U-box 211 272 - -
Vifa5g03494 322 CDD RING-HC_BAH1-like 208 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03494 Vifa-Chr5 1145321849 1145323300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03494 206 267 C3H Transcription Factor Family AT4G28270 40.299 9.25e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03494 K16275 - gmx:100787904 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03494 5 1145321849 1145323300 Vifa5g03494 5 1145321849 1145323300 ECH