Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03490 ATGTTGGATAAGCTAAGAAACATTATGGAGGAAAAAAAGGGAAAAGTGTCAAGCATGGCGATAAGAGGTAGACGAAAGGCCATTGCAATGGATCTAAAGAGTTGGATGGTATTTTCAGAAACAGGTGAATCCATCGTTGAGGATCTTGACAAACACTCCATCATGCGACGAACAGGTTTACCGTCGCGTGATCTTAGAGTTCTTGATCCAACACTTTTTTACCCTTCTTCTATTATAGGACGAGAGAAATCCATTGTTGTTAACCTAGAACACATTAAAGCCATCATCACTTCAAACGAGATGCTTATAATTAATTCTTCTAGCCCTTTCTTTATTTTGTTCCTTCAAGATCTTCAAGCGCGTGTTCCTCGTTCTAGTAATATCCATAAGCTTACATCGACTGGTAATGGCGTTGATGGTGATTCTCAATCAACAAATTTAGTAGAGGAAGGGTCACCGTTGTTACCAAGTCACGTTGATTCTCTGAATAATGCATCAAAGGGTACACTCATTGATGTAGCGGAAACATCATATTATAAGCAGTTACCTTTTGAGTTTAAAGCTCTTGAGGCTTGTATTGAATCTGCATGTGCATGCCTTGAATATGAGAATCAAAGATTGGAAGAGGAGGCTTACCCGGCTTTAGATGAACTGGCTTCTCAAATAAGTACTCTAAATCTTGAACGTGTAAGGCATATCAAGAATCGTTTGGTTGCACTTTCTGGTCGTGCACATAAGGTAGCGGATCAGCTAGAAAACTTGTTGGATGATGATAATGACATGGCTGAAATGTACTTGACAAAAAAACTTGACGATTGCTCAATAGGCCAAACACCATTAACAAAAGGATGCAATTTAGCTATTGATGAAGATATAGACAAAAGTGATGAATCAGATATGGTTCAATACAGATCCTATGAATCTAAACCTGACGTTGAAGAATTAGAGATGCTTTTAGAAGCATATTTTGCGCAGATAAATGGAATTTTGCAAAGATTATCCAGTTTGAGTGAGTATGTAGATGATACAGAGGACCACATCAACATAATGTTGGATGATAAGCGAAATCAACTACTACAAGTATCAATAATGTTCAGCACAATGAACGTGATAGTCAGTGCAGGTATTGCGGTTGTTGGGTGGTTTGGCATGAACATTCACATTGATCTCTTTGAAGGTCAACCTCGTCAATTTTGGGCTACAGTTGGTGGCACATTCTCAGGTTGTATATTGTTATTTATCGTTTCTATTTGGTGGGGTAAAAAAAGATATATTTTGTCTCAATAA 1287 0.3784 MLDKLRNIMEEKKGKVSSMAIRGRRKAIAMDLKSWMVFSETGESIVEDLDKHSIMRRTGLPSRDLRVLDPTLFYPSSIIGREKSIVVNLEHIKAIITSNEMLIINSSSPFFILFLQDLQARVPRSSNIHKLTSTGNGVDGDSQSTNLVEEGSPLLPSHVDSLNNASKGTLIDVAETSYYKQLPFEFKALEACIESACACLEYENQRLEEEAYPALDELASQISTLNLERVRHIKNRLVALSGRAHKVADQLENLLDDDNDMAEMYLTKKLDDCSIGQTPLTKGCNLAIDEDIDKSDESDMVQYRSYESKPDVEELEMLLEAYFAQINGILQRLSSLSEYVDDTEDHINIMLDDKRNQLLQVSIMFSTMNVIVSAGIAVVGWFGMNIHIDLFEGQPRQFWATVGGTFSGCILLFIVSIWWGKKRYILSQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03490 428 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 23 423 IPR039204 -
Vifa5g03490 428 Gene3D - 5 107 - -
Vifa5g03490 428 FunFam Magnesium transporter MRS2-1 20 106 - -
Vifa5g03490 428 FunFam Magnesium transporter MRS2-E 141 358 - -
Vifa5g03490 428 CDD Mrs2_Mfm1p-like 35 423 IPR039204 -
Vifa5g03490 428 Gene3D Magnesium transport protein CorA, transmembrane region 113 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03490 Vifa-Chr5 1144096159 1144097798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03490 34 426 MRS2 Gene Family AT3G19640 44.323 1.86e-115 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03490 - K16075 gmx:100808805 473.011