Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03471 ATGGAAGCAGTAGCTGCAGCCATTACAAAAAACAACAACGGTTATGATTCATTCTGCTTCACCAATGCTAAAAATAATAACATGAAAGTGAATACCGCTGACCCTTTGAATTGGGGTGCGGCGGCTGAAGCAATGAAAGGGAGTCACTTCGATGAAGTGAAACGTATGGTGGAGGAGTACCGTAAGCCGGTGGTTCGTCTGGGTGGCGAAACGCTCACCATTTCTCAGGTGGCTGCCATTGCGGCACACGACCAGGGTGTGAAAGTGGAGTTGTCGGAGTCTGCTAGAGCTGGCGTTAAGGCCAGCAGTGACTGGGTGATGGAGAGTATGAATAAAGGCACAGACAGTTACGGTGTCACCACCGGTTTTGGCGCCACCTCACATCGCCGAACCAAACAAGGAGGTGCTCTGCAGAAAGAACTCATCAGGTTCTTAAATGCCGGAATATTTGGAAGTGGAACCGAGTCAAACCACATACTGCCACACACAGCAACAAGAGCCGCCATGTTAGTGCGAATCAACACACTTCTCCAAGGCTATTCTGGAATTAGATTTGAAATCTTGGAAGCCATAACCAAGCTCATTAACAACAACATCACCCCGTGTTTACCGCTTCGAGGTACTATCACAGCTTCAGGAGATTTAGTCCCTCTTTCTTACATTGCAGGTTTACTAACAGGAAGACCGAATTCCAAAGCTCATGGACCTTCTGGAGAAATACTTAATGCCAAACAAGCTTTTCACTTGGCTGGAATCAATGCTGATTTCTTTGAATTACAACCAAAAGAAGGACTTGCACTTGTTAACGGAACTGCTGTTGGTTCTGGTTTAGCTTCTATTGTTCTATTTGAAGCTAACATCTTGGCCGTCTTGTCTGAAGTCCTATCTGCTATTTTCGCCGAAGTTATGCAAGGCAAACCCGAATTTACCGATCACTTGACGCACAAGTTAAAGCACCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACATATTTTGGATGGAAGTGCATACGTCAATGCCGCTAAGAAGTTGCATGAGACGGATCCTTTGCAGAAACCAAAACAAGATAGATATGCACTTAGAACTTCACCACAATGGCTTGGTCCTCTCATTGAAGTCATTAGATTCTCTACCAAATCAATTGAGAGAGAAATTAACTCTGTCAATGATAACCCTTTGATTGATGTTTCAAGAAACAAGGCTATTCATGGTGGGAATTTTCAAGGAACACCAATTGGAGTATCCATGGATAATACGCGTTTGGCTCTTGCATCCATTGGTAAACTCATGTTTGCTCAATTCTCAGAGCTTGTCAATGATTTTTACAACAACGGTTTGCCTTCGAATCTCTCTGCTAGTAGAAATCCCAGCTTGGATTATGGTTTCAAAGGATCTGAAATCGCCATGGCTTCTTATTGTTCCGAGTTACAGTACCTTGCAAATCCGGTCACAACTCATGTTCAAAGTGCCGAGCAACACAACCAAGATGTCAACTCCTTGGGTTTGATTTCTTCTAGGAAAACATATGAAGCCATTGAAATCCTACAACTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGACATTTGGAGGAGAACTTGAAAAACTCAGTCAAAAACATTGTAAGCCAAGTTGCTAAACGGACCCTTACAACAGGTGTTAATGGAGAACTCCATCCTTCAAGGTTTTGTGAAAAGGACTTGTTGAGAGTGGTTGATAGGGAGCATGTGTTTGCCTATATTGATGATCCTTGCAGTGCTACATATCCATTGATGCAAAAACTGAGGCAGGTCTTAGTGGATCATGCATTAATAAATGGAGAAAATGAGAAGAATTTGAACACATCAATCTTCCAAAAGATTGCAACTTTCGAGGATGAGTTGAAGACCCTTTTGCCAAAAGAGGTTGAAAGTGCAAGGGCTGCATATGAGAATGGAAATCCTAGAGTTCCAAACAAGATCAATGAATGTAGATCTTATCCACTTTACAAGTTTGTGAGACAAGAGTTGGGGACTGGTTTGCTAACAGGAGAAAATGTCATTTCTCCAGGTGAAGAGTGTGACAAATTATTTACAGCTATTTGCCAAGGAAAAATCATTGATCCCCTTCTTGAATGCTTGGGAGAGTGGAAAGGTGCTCCTCTTCCAATTTGTTAA 2178 0.4256 MEAVAAAITKNNNGYDSFCFTNAKNNNMKVNTADPLNWGAAAEAMKGSHFDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDQGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGTESNHILPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAKQAFHLAGINADFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVNAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNIVSQVAKRTLTTGVNGELHPSRFCEKDLLRVVDREHVFAYIDDPCSATYPLMQKLRQVLVDHALINGENEKNLNTSIFQKIATFEDELKTLLPKEVESARAAYENGNPRVPNKINECRSYPLYKFVRQELGTGLLTGENVISPGEECDKLFTAICQGKIIDPLLECLGEWKGAPLPIC 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03471 725 Gene3D - 538 659 IPR023144 -
Vifa5g03471 725 Gene3D Fumarase/aspartase (Central domain) 272 719 - -
Vifa5g03471 725 SUPERFAMILY L-aspartase-like 34 725 IPR008948 GO:0003824
Vifa5g03471 725 NCBIfam phenylalanine ammonia-lyase 34 714 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vifa5g03471 725 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 207 223 IPR022313 GO:0016841
Vifa5g03471 725 Pfam Aromatic amino acid lyase 72 550 IPR001106 -
Vifa5g03471 725 PANTHER HISTIDINE AMMONIA-LYASE 30 725 IPR001106 -
Vifa5g03471 725 FunFam Phenylalanine ammonia-lyase 538 659 - -
Vifa5g03471 725 Gene3D - 24 271 IPR024083 -
Vifa5g03471 725 FunFam Phenylalanine ammonia-lyase 25 271 - -
Vifa5g03471 725 FunFam Phenylalanine ammonia-lyase 272 581 - -
Vifa5g03471 725 CDD PAL-HAL 70 535 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03471 Vifa-Chr5 1141158619 1141160796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03471 11 725 Monolignol Biosynthesis Gene Families AT2G37040 81.983 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03471 K10775 - gmx:100803857 1286.17