Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03469 ATGAAGGGAAAAACCCCAAAACCTACGAAAGTTAGGGGAAGAAAAAAGCTATCAAATGGCAGAAACACTTTGCAGCTTCATTTCAGCAAATTCTCTCTCAATCAATACAAGCCCTTACCAACAACATCTTGTCCTTCCAACGCCGTAAGGGATACAAACGAAGCTGCCGAAACTGATTCCAGAGATTGTATTCTCAGTCAAGATTTATTTTGTTCTCCTGATTATTTAACGCCGGAGAATCAACGGATTTTTAACTGTTTGACATTCAATAAGGATAATAGTCCTTGCCCTAGATCGCCGGAGAAATTGACGACAGCGAGAAACAAGAGATGTAGGCTAGATGATGTCTACGCAAGGTCTCTTAGCTCTCCCGTTTTTAATGACCATCAACAAGATGTGGAACTTGATAAGGACTCTGTTTCAGAGGAAGTATCTCTTGCAGAGGAATTTTCTCTTGATAAATTAAAAGTAGCTGTTAAGCCAAATCCCCAGAATTATGTGTCACAATCTGCAGCTGCATTGCGTTGCAGGGCTATGCCTCCTCCTTGCTATAGGAACCCCTATTTAAAAGATGTTTCACAAAAGGAGACAGATCCCTTTGCAAACCAAAGATCCAAATGTGCAGGGTTCTTCCCTAAATTTACATCCGATGAGGGTCTTTCACGCTATCGCACCGATTTTGAAGAGCTTGAGCAAATTGGCATAGGGAACTTTAGTTGTGTTTTTAAAGTATTAAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGCACTAGACAGTTACACCTGGAAACAGAAAGGAAAAAAGCTTTGATGGAAGTTCAATCTTTGGCAGCCTTGGGTTCTCATGAGAACATTGTGGGGTATTATTCTTCATGGTTTGAAAGTGAACAGCTGTACATTCAGATGGAGATATGTGATCATAGCTTATCCAAATACAAAGGCTCTGAGTTATTATCAGAAGGACAACTCTTAGAAGTTTTATATCAGATTGCCAATGCACTGCGATTTATACACGAGAAGGGAATAGTTCATCTTGATGTTAAGCCTGATAATATTTATGTTAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTTATTGATAATAGCCTTCCAATCGAGGAAGGAGATGCCCGTTATATGCCCCAGGAAATCCTTAATGAGAAATATGATCACCTTGACAAGGTTGATATTTTCTCGCTGGGAGCTTCTATTTATGAGCTTGTTCGAAAATCACCTTTGCCAGAATCACGATGTCATTTTTCAAATCTAAAAGAGGGCAAGTTGTCACTCCTTCCCAGCAATACAATGCAATTTCAAAACTTGCTCAAGGCCATGATTGATCGTGATCCAGTTAAGAGGCCGTCTGCCAGAGAGTTAGTAGAGAATCCAATTTTTGACAGGGTCTTAAGAAGAGCGAAAAATTGA 1443 0.3985 MKGKTPKPTKVRGRKKLSNGRNTLQLHFSKFSLNQYKPLPTTSCPSNAVRDTNEAAETDSRDCILSQDLFCSPDYLTPENQRIFNCLTFNKDNSPCPRSPEKLTTARNKRCRLDDVYARSLSSPVFNDHQQDVELDKDSVSEEVSLAEEFSLDKLKVAVKPNPQNYVSQSAAALRCRAMPPPCYRNPYLKDVSQKETDPFANQRSKCAGFFPKFTSDEGLSRYRTDFEELEQIGIGNFSCVFKVLKRIDGCLYAVKRSTRQLHLETERKKALMEVQSLAALGSHENIVGYYSSWFESEQLYIQMEICDHSLSKYKGSELLSEGQLLEVLYQIANALRFIHEKGIVHLDVKPDNIYVKNGVYKLGDFGCATLIDNSLPIEEGDARYMPQEILNEKYDHLDKVDIFSLGASIYELVRKSPLPESRCHFSNLKEGKLSLLPSNTMQFQNLLKAMIDRDPVKRPSARELVENPIFDRVLRRAKN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03469 480 Pfam Protein kinase domain 227 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03469 480 Gene3D Phosphorylase Kinase; domain 1 216 306 - -
Vifa5g03469 480 SUPERFAMILY Protein kinase-like (PK-like) 220 473 IPR011009 -
Vifa5g03469 480 FunFam WEE protein kinase 217 305 - -
Vifa5g03469 480 ProSiteProfiles Protein kinase domain profile. 227 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03469 480 FunFam Wee1-like protein kinase 306 475 - -
Vifa5g03469 480 ProSitePatterns Protein kinases ATP-binding region signature. 233 256 IPR017441 GO:0005524
Vifa5g03469 480 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 31 471 - -
Vifa5g03469 480 Gene3D Transferase(Phosphotransferase) domain 1 307 475 - -
Vifa5g03469 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Vifa5g03469 480 SMART serkin_6 227 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03469 Vifa-Chr5 1140560170 1140570110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03469 2 474 Core Cell Cycle Gene Families AT1G02970 56.275 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Vifa5g03469 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03469 K06632 - gmx:547742 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03469 5 1140560170 1140570110 Vifa5g03469 5 1140560170 1140570110 ECH