Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03459 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGTGAAGAACAGGTTCAAAATAATCTCAATGATTCAAGTTCAGGACCATCTGGTGCCTCAAATAGCAATGGTTCCAGCAATCAACAACAAACCAAGAAGAAAAGAAATCTTCCAGGAACACCAGATCCTAGTGCTGAAGTTGTAGCTTTATCACCAACAACGTTAATGGCAACAAACAGATTTGTGTGTGAGATATGCAACAAAGGCTTTCAAAGAGACCAAAATCTTCAGTTACACCGTAGAGGTCACAATCTTCCATGGAAACTTAGACAAAGAACAAGCACAGAAGTGAAGAAAAAGGTGTACGTGTGTCCTGAATCATCGTGTGTCCACCATAACCCAGCTCGCGCGTTAGGCGACCTTACTGGTATCAAAAAGCATTATAGCCGCAAACACGGCGAGAAGAAATGGAAATGTGATAAGTGCTCTAAAAGATACGCTGTTCAATCTGATTGGAAAGCTCACCAGAAAACTTGTGGCACAAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGACAGTTTTATAACTCATAGAGCTTTCTGTGATGCATTAACTGAAGAAAACCACAGAGTGAACCAAGGATTAACCAGTGGCATGCCACCAAACTTACAAAACCAAATGCATAATGATATCTCTACTATGCCTCTAACAACTATTTCCAACATTTCGTCGGAATTAATCAGCGACTCGCTAAAATCGCCGACTCAAGAACATGTTCCAATACAATTCAGATCAACCAATGCATGTGGTGGCATGTTTTCAACAAGTGCAGGTGCACTTTTCGGTGGCCCGAAAACCTTACCTCCCTCTTCTTCATCTCTTCAACTCAGTTCGAATTCCAATAGCTTCAATTACTTCAATGATAACAAACTCGGAGGACTAATTTCTGGCTCGGTTCAAATGTCGGCTACGGCTTTATTACAAAAAGCAGCACAGATGGGTGCTACTGCAAGCAATAGTGTTAACTCTTCCATGATGCAGAAAAGCTTTGTTAGTAGTATGATTAGTCCTAATCATGATCATCTTTCTGGTTCCATCATGATGCAGCATAACCATAACCATAACCAAAACCAAAATCAACCCTCTTATGAACAATTTAATCCACTGCTACACCACAGTGATTTATCTAACATGGCTGGTGTTAGTGGTGGTGGAGCATTTACCAACCAATTGTATCAAAAACAACATCAAGAGATTTCATTACTATTTGATAATAATGCTAATGACATGGGAATGTTTGGCCAAGGATTGATGAAAAATGTGGCACAAGAGGTTACTGATTGTTCAAATTTGATCCATGGAAGTGATGTGGCAAGAGTGCATGATTTCTTGGGAATTGGAGGTTCAAATTCAAGTCTGCATGAACCACAACAACATAGATTGGAAATTATGAATGATTTTCATCATCATCATCTTCCACATGAGGATTCACCTATGGAGAAATCAATTTGGGATGATTGA 1521 0.3951 MSNISGDEGSFSSGNNGEEQVQNNLNDSSSGPSGASNSNGSSNQQQTKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKKVYVCPESSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENHRVNQGLTSGMPPNLQNQMHNDISTMPLTTISNISSELISDSLKSPTQEHVPIQFRSTNACGGMFSTSAGALFGGPKTLPPSSSSLQLSSNSNSFNYFNDNKLGGLISGSVQMSATALLQKAAQMGATASNSVNSSMMQKSFVSSMISPNHDHLSGSIMMQHNHNHNQNQNQPSYEQFNPLLHHSDLSNMAGVSGGGAFTNQLYQKQHQEISLLFDNNANDMGMFGQGLMKNVAQEVTDCSNLIHGSDVARVHDFLGIGGSNSSLHEPQQHRLEIMNDFHHHHLPHEDSPMEKSIWDD 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03459 506 MobiDBLite consensus disorder prediction 1 53 - -
Vifa5g03459 506 FunFam protein indeterminate-domain 12-like 56 124 - -
Vifa5g03459 506 SUPERFAMILY beta-beta-alpha zinc fingers 76 174 IPR036236 -
Vifa5g03459 506 SMART c2h2final6 153 173 IPR013087 -
Vifa5g03459 506 SMART c2h2final6 118 148 IPR013087 -
Vifa5g03459 506 SMART c2h2final6 77 99 IPR013087 -
Vifa5g03459 506 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Vifa5g03459 506 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Vifa5g03459 506 Gene3D Classic Zinc Finger 110 201 - -
Vifa5g03459 506 MobiDBLite consensus disorder prediction 1 61 - -
Vifa5g03459 506 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Vifa5g03459 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Vifa5g03459 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 475 IPR031140 -
Vifa5g03459 506 Gene3D Classic Zinc Finger 73 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03459 Vifa-Chr5 1137680024 1137682290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03459 27 338 IDZ Gene Family AT3G50700 53.333 3.23e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g03459 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03459 - - gmx:100782774 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03459 5 1137680024 1137682290 Vifa5g03459 5 1137680024 1137682290 ECH