Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03458 ATGGAACCCGTTGTGATTCTGGAGAAGGACGAGCTCGTTGCCGGTGGGACTCATGAGTTTTCTGATGAAGAGCCTTGGGGGATAGCCTTGATTTTTGCCTCCGTCCCCAAGGAGGCGTTTACAGCTGTGGGGGGCGAAACGAGTTCGTCAGATAAAATGAAACGCGAGACTAAGCTGGAATTCTCCCCGGAAGAAGAAGATATAGTTGCAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCTGGAAGGATTCCAGGAAGAAGCGCAGAAGATATTGAAAAATATTGGAACTCAAAGTTTTCTTCTTCAACTGCATAA 327 0.4526 MEPVVILEKDELVAGGTHEFSDEEPWGIALIFASVPKEAFTAVGGETSSSDKMKRETKLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRSAEDIEKYWNSKFSSSTA 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03458 108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Vifa5g03458 108 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 55 104 - -
Vifa5g03458 108 CDD SANT 60 100 IPR001005 -
Vifa5g03458 108 Pfam Myb-like DNA-binding domain 60 101 IPR001005 -
Vifa5g03458 108 SUPERFAMILY Homeodomain-like 60 103 IPR009057 -
Vifa5g03458 108 SMART sant 57 105 IPR001005 -
Vifa5g03458 108 Gene3D - 60 104 - -
Vifa5g03458 108 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03458 Vifa-Chr5 1137485028 1137488709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03458 61 104 MYB Transcription Factor Family AT5G52600 45.455 1.31e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa5g03458 Myb_DNA-binding 1.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03458 - - tpra:123897785 117.472